Argopecten irradians (bay scallop): 138325871
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Entry
138325871 CDS
T10542
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
airr Argopecten irradians (bay scallop)
Pathway
airr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
airr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
138325871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
airr03400
]
138325871
Enzymes [BR:
airr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
138325871
DNA repair and recombination proteins [BR:
airr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
138325871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
MshEN
Motif
Other DBs
NCBI-GeneID:
138325871
NCBI-ProteinID:
XP_069127951
LinkDB
All DBs
Position
6:complement(40103331..40139559)
Genome browser
AA seq
917 aa
AA seq
DB search
MADVDADDKPTVTVASKVSFAELCGLLEKISKTQGNDKKKRTLTDFVDKWRDFHNSLHKD
GKDTTADSFYPAMRLLLPHHEKERVAYGIKEHMLAKLLIEVLCLGKDSADANRLLNYKAP
KTARADAGDFAGVTYFVLKNRCPEKGTLTIQEVNDCLDGIAQNNAAKKKDLVRKNVLRLL
TNMSAIELKWLIRMIVKELKVGLSQASVLSVYHPDAEDFFNVNNNLEKVCRMLRDRSVRV
HEIGISIFSPFSPMLGERASPDEVEKLMDGKTYFIETKFDGERMLLHKRENEYKYFSRSA
NEYTATFGSNSFDGNFTPFIHDLFKPGIKSCILDGEMLGYHAATKTYATKAMNTDIKRQQ
QEGYQPCYNIFDIVVLNDKVLTNKPIRERLQLLQTVIEPEEGRVQISQHTEANTNQECAD
ALNKAIDGREEGIMVKNPESVYRPNTRKGGWIKIKPEYVGGLMDELDVLVVGGYLGVGHR
GGMMSHFLCAVAVATDDGEKPEVFHSFCKVGSGYSKKELGEFNEKLKDHWKVFDKRNPPT
SVILASGFKEKPDAWIEPCNSCIVQIKAAEIIDSDRFKTGCTLRFPRVECFRDDKAWHEC
MTLADILELKEKSGGKLAGGKVQLNDGEEPVKKKRKVVSRVVRPTLGAQFKGADVASITQ
VSKMLEGKEFCVVNGPSAFPKHAIETKIVELGGRIVQNPGPTTFCVLADKVAVRVNNLIR
RDVYDVVKVTWFQRCVQASRWIPWSPADMIHVSPKTQQDFQKLYDEYGDSYVDPTSPDQL
ETVFGRITKVENDMSDPQDIAEIEEAYFPDDSPYGLFRTCRFYLDNSLVINDKTTKLKNS
TLDFLALELRFFGGVMSEGLDQEVSHVMVDKSDLSRLEEIRQIRRQRKRKFHIVTKDWVR
QCMEEGTLVSARSFEPS
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgttgatgctgacgataaaccaacagtaactgttgcatccaaggtctcattt
gcagagctgtgtgggcttcttgagaaaatctccaaaacacagggaaatgacaaaaagaaa
cggactttgacagactttgttgataaatggcgagattttcataactctttacacaaagat
ggtaaagatacgacagcagattcgttctatcctgccatgaggttattgctgccccatcat
gagaaagaaagagtcgcatatggaatcaaagagcacatgttggccaaactgctgattgag
gtattatgcctgggtaaagatagtgctgatgccaacaggctcctaaactacaaagctcca
aaaactgccagagcggatgcaggagattttgctggtgttacctactttgtgctgaagaac
cgctgccctgagaaaggcacactcaccatacaggaggtaaacgactgtctggatggtatt
gcccagaacaacgcagccaagaaaaaggacttggtcaggaaaaatgtgctacgactgcta
acaaacatgtcagccatagaactgaagtggctcattaggatgatagtgaaggagttgaag
gtcggtctgagtcaggcgtcagtcctatctgtttatcatcccgacgctgaggactttttc
aatgtcaacaacaacctggaaaaggtatgtcgaatgctgagagatcggagtgttcgagtt
cacgaaattggaattagtatcttctcaccattttcaccaatgttgggggagagagcgtca
ccggatgaggtggagaaactgatggatgggaagacgtacttcatagagaccaagtttgat
ggggagcgcatgctgttacacaaacgagagaatgaatataaatacttctctaggagtgcc
aacgagtacaccgccacgttcgggtccaacagttttgacgggaattttacgccatttatt
catgacttgttcaaacctgggatcaaatcctgtatactggatggagaaatgctgggatac
catgcagcaaccaaaacttatgcaacaaaggccatgaacactgacattaaacgacaacaa
caagaaggctatcagccgtgctacaacatctttgacattgtggtccttaacgataaagtt
ctcaccaacaaaccaatcagagagaggctacagctgctacagactgtgattgaacccgag
gagggcagagttcagatcagccagcatacagaggccaatacaaaccaggagtgtgccgac
gccctgaacaaggccatagatggtagagaggagggaatcatggtgaagaaccctgaatct
gtgtacagacccaacacaaggaagggtggctggattaagataaaacccgagtatgtaggc
ggcctgatggacgagttagatgtcctagtagtcgggggttaccttggtgtcggccatcgt
ggtgggatgatgtcacactttctgtgtgctgtagcagtggcgacagacgacggagagaaa
cctgaagttttccactctttctgtaaggttggatcaggatattctaaaaaggagcttgga
gaatttaacgagaaattgaaggatcactggaaagtgtttgacaagaggaaccctccaacc
tccgtgatactggcatcaggcttcaaggagaaaccagacgcctggatagaaccgtgcaac
tcatgtattgtccagataaaggcagcagaaataattgacagcgaccggtttaagactggc
tgtacgctaaggttccctcgagtcgagtgtttccgtgatgataaggcctggcatgaatgt
atgactttggcagatatattggaactaaaagagaagtctggaggaaagttagctggtgga
aaagtccagctgaacgatggtgaggagccagtgaagaaaaaacggaaggttgtgagtcga
gttgtccgccccaccctgggagctcagttcaaaggtgctgatgtggcatctatcacccag
gtatcaaagatgttggaaggaaaagagttttgtgtggtgaatggtccttcagcgtttcct
aagcatgcaatagagactaagattgtagaattaggaggcagaattgtacaaaatccaggt
ccgaccacattctgtgtcctggccgacaaagtagctgtacgggtaaataacctcatcaga
cgtgatgtttatgacgtagtcaaagtgacgtggtttcagcgctgtgtgcaggctagtcga
tggattccatggtcccctgctgacatgatccatgtttcaccaaagacccagcaggacttc
cagaagttgtacgacgagtacggggacagctatgttgatccgaccagtccagatcaacta
gagactgtgtttggtaggataacaaaggtagagaatgatatgagtgatccccaggatata
gctgaaatagaggaggcctacttccctgacgattctccatatggacttttccgtacttgc
agattctacctggataacagtctagtaattaatgataagactactaaactaaagaactcc
acactggacttcttagcgctagagttacgtttctttggtggtgtgatgtcggaggggctc
gaccaggaagtgtctcatgtcatggtagataaaagtgacctcagtcggcttgaagaaatt
aggcaaatcaggagacaaaggaaaaggaagttccacattgtcaccaaggactgggtaagg
cagtgtatggaggaaggaacattggtgtccgcacgcagcttcgaaccatcgtaa
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