Alistipes ihumii: NQ491_01250
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Entry
NQ491_01250 CDS
T08511
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aiu
Alistipes ihumii
Pathway
aiu03030
DNA replication
aiu03410
Base excision repair
aiu03420
Nucleotide excision repair
aiu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ491_01250 (ligA)
03410 Base excision repair
NQ491_01250 (ligA)
03420 Nucleotide excision repair
NQ491_01250 (ligA)
03430 Mismatch repair
NQ491_01250 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aiu03032
]
NQ491_01250 (ligA)
03400 DNA repair and recombination proteins [BR:
aiu03400
]
NQ491_01250 (ligA)
Enzymes [BR:
aiu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NQ491_01250 (ligA)
DNA replication proteins [BR:
aiu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NQ491_01250 (ligA)
DNA repair and recombination proteins [BR:
aiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NQ491_01250 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NQ491_01250 (ligA)
MMR (mismatch excision repair)
DNA ligase
NQ491_01250 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NQ491_01250 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
BRCT_2
PTCB-BRCT
RNA_pol_A_CTD
KorB
Motif
Other DBs
NCBI-ProteinID:
UWN57431
LinkDB
All DBs
Position
299468..301579
Genome browser
AA seq
703 aa
AA seq
DB search
MREKIELLRRQINEHNYRYYVLNDPLIGDYEFDALLRELQELEAAHPEFDDPNSPTRRVG
SDSTNEFATVEHRYPMLSLSNTYSLDEIREFDARVRKEVGEAEYVCELKFDGTAISLTYE
NGRLLRAVTRGDGTRGDDVTANVRTIRSVPLQLRGAGYPAYFEIRGEILMPFRSFERLNR
EREDIGETPFANPRNAAAGSLKQQSSAETARRELDCTLYSLVGDDLPFGTHYDSLMAARE
WGFKISDQIALCRDMNEIDEYIRRWDKARKELPFATDGVVIKVDSFALQHRLGYTAKAPR
WAVAYKFKAEQALTRLLSVDFQVGRTGAITPVANLEPVLLAGTVVKRASLHNAEQIALLD
IRLGDHVYVEKGGEIIPKITGVDLSSRPMQSEPFRFITHCPCCGTELVKYEGEARHYCPN
QSHCPPQIVGRMVHFISRKAMNIDGLGDETVQLLYDAGLISDVADLYRLRREDLVDLPRL
GDKSADNILRSIDASRDVPFQRVLFAIGIRFVGETTAKNLALHFRSMDALMNATPEELAA
ADEVGDKIALSIVDYFRDEANRKIVARLRESGLRFEIGEKQLLSNALDGLKFVISGTFSE
HSRDQLKELIESHGGRNQSGVSANTDYLLAGDRIGPAKLNKARKLGVRIIGEEDFVRMLS
GDMPDAAVAPGDKENPPGPEPPEESVDKMAASDQNNVKQGTLF
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgagaaaatagagctgttgagaagacagatcaacgagcataattaccggtactac
gtgctgaacgatccgctgatcggagactatgagttcgacgccctgctgcgcgagttgcag
gagctggaggcggcccatcccgagttcgacgatcccaactcgccgacccggcgcgtgggg
agcgactccaccaacgaattcgctacggtcgagcaccgctatccgatgctgtcgctttcc
aacacctactcgctcgacgagatcagggagttcgacgcgcgggttcgcaaggaggtcggc
gaggccgagtacgtatgcgaactgaagttcgacggaaccgcaatcagcctgacttacgag
aacggccgtctgttgcgggccgtgacgcgcggcgacggtacgcgcggggatgacgtgacg
gccaatgtccggacgatacgttccgttccgttgcagttgcggggggcgggctatcctgcc
tatttcgagatacggggcgagatattgatgcccttccgttcgttcgagcgactgaatcgc
gagcgggaggatataggcgagacgcctttcgccaatccccgcaatgcggccgccggttcg
ctcaagcagcagagctcggccgagacggcccggcgcgagctcgactgtacgctctattcg
ctcgtcggcgacgacttgccgttcggaacgcattacgacagcctgatggcggcccgtgag
tggggattcaaaatctcggaccagatcgccctgtgccgtgacatgaacgaaatcgacgag
tacatccgtcgttgggataaggcccggaaggagctgccgttcgcaaccgacggcgtcgtg
atcaaggtcgacagtttcgcgcttcagcaccgcctcggctatacggccaaggcgccgcgt
tgggccgtcgcctacaagttcaaggccgagcaggcgctgactcggctgctgtcggtcgat
tttcaggtcggaaggaccggagcgattacgcccgtagccaatctggagccggttctgttg
gccggtacggtcgtcaagcgcgcctcgctgcacaatgccgaacagatcgcgctgctcgat
atccggctgggcgaccatgtgtatgtggaaaaggggggcgagatcatccctaagataacg
ggagtcgatctttcgtcgcgcccgatgcaaagcgagcctttccgatttatcacgcattgc
ccgtgctgcgggaccgaactggtcaagtacgagggcgaggcccgccactattgtccgaat
cagagccattgtcctccgcagatcgtcggccgcatggtccatttcatttcccgcaaggcg
atgaacatcgacggattgggagacgaaaccgtccagttgctttatgacgcggggctgatt
tccgacgtggccgacctgtaccggctcaggcgcgaggatctggtcgatctgccccgattg
ggcgacaagtcggccgataacattctgcgcagcatagacgcctcgcgcgatgtgcccttt
cagcgggtgttgttcgcgatcggcatccggttcgtcggagagacgacggccaaaaatctc
gccttgcatttccgcagcatggatgcactgatgaacgctacgcctgaagagctggctgcg
gcggacgaggtgggcgacaaaatcgcgctcagcatcgtcgattattttcgcgacgaagcg
aaccggaagatcgtggcccgcttgcgtgaaagcggcttgcggttcgagatcggggagaag
caactgctttccaatgcgctcgacggactgaaattcgtcatttcgggaactttttccgag
cattcgcgcgatcagctcaaggaattgatcgaatcgcacggcggccgaaatcagagtgga
gtttcagccaatacggactatctgctcgccggggaccgtatcggtccggcgaagttgaac
aaggcgcgcaaactgggcgtgcggattatcggcgaggaagacttcgtgcggatgctctcg
ggcgatatgccggatgcggcggtcgctcccggagacaaagaaaacccgccgggcccggag
cctccggaagaatcggtcgataaaatggcggcttccgatcaaaataatgtgaagcaaggc
acattgttttga
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