Arthrobacter jiangjiafuii: KKR91_05235
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Entry
KKR91_05235 CDS
T07979
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ajg
Arthrobacter jiangjiafuii
Pathway
ajg03030
DNA replication
ajg03410
Base excision repair
ajg03420
Nucleotide excision repair
ajg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KKR91_05235 (ligA)
03410 Base excision repair
KKR91_05235 (ligA)
03420 Nucleotide excision repair
KKR91_05235 (ligA)
03430 Mismatch repair
KKR91_05235 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajg03032
]
KKR91_05235 (ligA)
03400 DNA repair and recombination proteins [BR:
ajg03400
]
KKR91_05235 (ligA)
Enzymes [BR:
ajg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KKR91_05235 (ligA)
DNA replication proteins [BR:
ajg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KKR91_05235 (ligA)
DNA repair and recombination proteins [BR:
ajg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KKR91_05235 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KKR91_05235 (ligA)
MMR (mismatch excision repair)
DNA ligase
KKR91_05235 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KKR91_05235 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Zn_ribbon_TFIIB
DNA_meth_N
DUF6782
Motif
Other DBs
NCBI-ProteinID:
QWC11001
UniProt:
A0A975R1Z5
LinkDB
All DBs
Position
1106339..1108579
Genome browser
AA seq
746 aa
AA seq
DB search
MSIAKTTPDTSAPAAAVDSLSTETPPSGDLREEYQSLADQVRKYRFAYYNEDAPLVSDAE
FDELYRRLEELEALHPELVTNDSPTQEVGGEISAAFTPVEHLQRMYSLEDVFSLDELDAW
VRRAEASVANIAPGEKIKWLTELKIDGLAVNLLYRNGELVRAATRGDGTTGEDITHNVLT
IKSIPRSLKGTDIPAEMEIRGEVFIPSKEFAHLNETMVEAGKAPFANPRNAAAGSLRQKD
PEVTAQRPLSMYVHGIGAREGLSATSQSETYELLKAWGLPTSPYYKVLDSYEQVLDFIAV
NGEHRHDLSHEIDGIVVKVDDFGLQRALGHTSRVPRWSVAYKYPPEEVNTKLLDIRVNVG
RTGRVTPYGIMTPVSVSGSTVEMATLHNQDVVKAKGVKIGDIVVLRKAGDVIPEIVGPVV
ALRDAQVPPVRDFVMPTHCPSCGTELKPAKEGDVDIRCPNAKSCPSQLRERVFHLAGRGA
FDIEALGWEAAIALTQPAEPAVPPLTSEAGLFDLSVEDLADVRIERPKRVKGVVDGTELV
PYFYSKGTIKKPSEPTATTRKLFTELEKAKTQPLWRVLVALSIRHVGPTAARALATAFGS
MDAIRAATEEQMAHVDGVGPTIAAALTEWFAEDWHREIVDRWAAAGVRMADERDETVPRT
LEGLTIVVTGTLPTFSRDEAKEAIITRGGKASGSVSKKTDYLVAGENAGTKLDKAESLGV
PVLDEDGFRLLLDGRLQENRPEAGTA
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
gtgagcatagcgaagacaaccccggatacatccgccccggccgccgccgtcgattccctg
agcacggagacgccgcccagcggagacctgcgcgaggaataccagagcctggcggaccag
gtacggaagtaccgcttcgcgtactacaacgaagacgccccgctggtctcggatgccgaa
ttcgacgagctctaccgccggctggaagagctcgaggcgctgcaccccgagctggtcacc
aacgactcacccacccaggaagtcggcggcgaaatctccgcagcctttaccccggtggaa
cacctgcagcggatgtacagcctggaggacgtcttctccctggatgaactcgacgcctgg
gtccgccgggccgaagcctcggtggccaacattgcgccgggggagaagatcaagtggctc
accgagctgaagattgacggcctggccgtgaacctgctctaccgcaacggcgagctggtc
cgggctgccacccgcggcgacggcaccaccggtgaggacatcacccacaacgtcctgacc
atcaagtccatcccgcggtccctcaagggaaccgacattcccgcggaaatggagatccgc
ggtgaagtctttatcccctccaaggagttcgcccacctgaacgagaccatggtcgaagcg
ggtaaggcgcccttcgccaacccgcgcaacgccgcagccggctcactgcggcagaaggat
cccgaggtcaccgcccagcggccgctcagcatgtacgtgcacggcatcggcgcccgcgag
ggcctgagcgcaaccagccagtccgagacctatgaactgctcaaggcctggggcctgccg
acgtcgccctactacaaggtcctggacagctacgagcaggtcctggacttcatcgccgtc
aacggcgaacaccgccatgacctctcgcacgagatcgacggcattgtcgtcaaggtcgac
gacttcggactgcagcgcgccctgggccacacctcccgggtgccgcgctggtcggtcgcc
tacaagtatccgccggaggaagtaaacaccaagctcctggatatccgggtcaacgtgggc
cgcaccggccgcgtcaccccgtacggaatcatgaccccggtgtccgtctcgggttccacc
gtggagatggccaccctgcacaaccaggacgtggtcaaggccaagggcgtgaagatcggc
gacattgtggtgctgcgcaaggccggtgacgtgattccggaaatcgtgggccccgtcgtc
gcgctccgcgacgcgcaggtccctccggtccgcgacttcgtgatgcccacccactgcccc
tcctgcggcaccgaactgaagccggccaaggagggcgacgtcgacatccgttgccccaat
gccaagtcctgcccctcgcagctgcgtgagcgcgtgttccacctggccggccgcggcgcc
ttcgatatcgaagccctcggctgggaggcagcgattgccctgacccagcccgcggaaccc
gccgttccgccgctgaccagcgaggccgggctgttcgacctgagcgtcgaagatctggct
gatgtccggatcgagcgccccaagcgggtcaaaggcgtcgtggacggcaccgaactggtg
ccgtacttctactccaagggcaccatcaagaagccctccgaacccaccgcgaccacacgc
aagctcttcactgagctggaaaaagccaagacccagccgctgtggcgcgtgctggtggcc
ttgtccatccggcatgtcggccccacggcggcccgcgcgctcgccaccgcgttcggctca
atggacgccatccgcgccgccaccgaagagcagatggcgcatgtcgacggcgtcggcccc
accatcgccgcggccctgaccgagtggttcgcggaggactggcaccgcgagatcgtggac
cgctgggctgcggccggcgtccggatggccgatgaacgcgacgaaaccgtgccgcgcacc
ctcgagggcctgacgatcgtggtcaccggcaccctgccgaccttcagccgcgacgaggcc
aaggaagccatcatcacccgcggcggcaaagcgtcgggctcagtgtccaaaaagaccgac
tacctggtcgcgggggagaacgccggcacgaagctggacaaggccgaatccctgggcgtg
cccgtgttggatgaggacggtttccgcctgctgctcgacggccggttgcaggagaaccgg
ccggaggcgggcacagcatga
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