Acidipropionibacterium jensenii: C0Z10_04295
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Entry
C0Z10_04295 CDS
T05836
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aji
Acidipropionibacterium jensenii
Pathway
aji03030
DNA replication
aji03410
Base excision repair
aji03420
Nucleotide excision repair
aji03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aji00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C0Z10_04295
03410 Base excision repair
C0Z10_04295
03420 Nucleotide excision repair
C0Z10_04295
03430 Mismatch repair
C0Z10_04295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aji03032
]
C0Z10_04295
03400 DNA repair and recombination proteins [BR:
aji03400
]
C0Z10_04295
Enzymes [BR:
aji01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C0Z10_04295
DNA replication proteins [BR:
aji03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C0Z10_04295
DNA repair and recombination proteins [BR:
aji03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C0Z10_04295
NER (nucleotide excision repair)
GGR (global genome repair) factors
C0Z10_04295
MMR (mismatch excision repair)
DNA ligase
C0Z10_04295
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C0Z10_04295
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AZZ39097
LinkDB
All DBs
Position
948549..950777
Genome browser
AA seq
742 aa
AA seq
DB search
MVNEENPVEASTSESTLRHTWKELVDQILAAQEAYYGADAPTISDARYDHLMRDLQTLEE
DNPQLRTPDSPTQRVGAPQKVTDFAPVQHIERLLSLDNVFTLDELAEWIARAGATASQQV
PGEHSQLLCELKIDGLALDLVYRNGRLDSGATRGDGRVGEDVTGNVRTIRAIPQRLTGDD
IPALLEVRGEVFFPVEDFADLNAHLVEVGKPPFANPRNAAAGSLRQKDPRVTAGRPLSMI
CHGLGRVDGHDFPSQGHAYRKLAEWGLPVSPYYKLVDTPGQVMDFVQYWGEHRDEAAHQI
DGIVVKMDDVEVQRALGATSRAPRWAIAFKYPPEEVNTKLLDIRVNVGRTGRVTPYGVME
PVAVAGSTVEMATLHNAFEVKRKGVLIGDTVVLRKAGDVIPEILGPVVELRDGTEREFQM
PTVCPSCGATLGYEKEGDKDLRCPNTRGCPSQLRERVFALASRSGLDIEALGWEAAIALT
DPENARPDPSLVTGEMPEPQTPVLTSEAGLFDLQPDDLADVQVWRQRKVKGSPGPWVREP
YFWTRATRTRPSAPAANTRKMFDELAKARNQPLWRVLVALSIRHVGPTAARALATRFGSL
AAIRAASQEELAQTDGVGPVIAESVIDWFGVDWHQEIVERWAAAGVRMADDTSGGPAATL
EGLTVVVTGSLEGFSRDEAKEAILSRGGKAAGSVSRKTDYVVVGANAGSKETRARELGRP
ILDEAGFRHLLDHGPQGVPTVG
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgaggagaacccggtggaggccagcacctccgagtcgacgctgcggcacacc
tggaaggagctggtcgaccagatcctggccgcccaggaggcctactacggtgccgatgcg
ccgaccatctccgatgcccggtacgaccacctgatgcgcgacctccagacgttggaggag
gacaacccccagctgcgcaccccggactcgcccacccagcgcgtcggcgcgccgcagaag
gtcaccgacttcgccccggtgcagcacatcgagcggctgctcagcctggacaacgtcttc
accctggacgagctcgccgagtggatcgcccgggccggggcgacagcctcccagcaggtc
cccggtgagcactcccagctgctgtgcgaactcaagatcgacggcctcgccctggatctg
gtctaccgcaacggccggctcgacagcggtgccacccgcggcgacggacgggtcggcgag
gacgtcaccggcaatgtgcgcaccattcgggccatcccgcagcgactcaccggcgacgac
atccccgccctgctggaggtgcgcggggaggtcttcttcccggtggaggacttcgccgat
ctcaacgcccatctggtcgaggtgggcaagccgccgttcgccaacccccgcaacgcggcg
gccgggtcgctgcgccagaaggacccccgggtcaccgccggacggccgctgtcgatgatc
tgccacggactgggacgggtggacggccacgacttccccagccagggccacgcctaccgc
aagctcgccgagtggggactgccggtctcgccctactacaagctggtcgacacccccggc
caggtgatggacttcgtccagtactggggggagcaccgcgacgaggccgcccaccagatc
gacgggatcgtcgtcaagatggacgacgtcgaggtgcagcgggcgctgggtgccacctcc
cgggccccccgctgggcgatcgccttcaagtacccgcccgaggaggtcaacaccaagctg
ctggacatccgcgtcaacgtcggccggaccggccgggtcaccccctacggggtgatggag
ccggtcgcggtggcgggctccacggtcgagatggcgaccctgcacaacgccttcgaggtg
aagcgcaagggtgtcctgatcggcgacacggtcgtgctgaggaaggccggagacgtcatt
cccgagatcctcgggccggtcgtcgagctgcgcgacggcaccgagcgggagttccagatg
ccgaccgtctgcccctcctgcggagccaccctcggctacgagaaggagggggacaaggac
ctgcgctgccccaacaccagaggctgcccctcccagctgcgcgagcgcgtcttcgcgctg
gcctcccgctccggactcgacatcgaggccctgggatgggaggccgcgatcgccctcact
gatcctgagaacgcccggcccgacccctctctggtgaccggggagatgcccgaaccccag
accccggtgctcaccagcgaggccggactgttcgacctgcaacccgacgacctcgccgac
gtccaggtgtggcgccagcgcaaggtgaagggctctcccgggccgtgggtccgggaaccc
tacttctggacccgggccaccaggacccggccctcggccccggcggccaacacccgcaag
atgttcgacgagctggccaaggcccgcaaccagccgctgtggcgggtcctggtggcgctg
tccatccgccacgtcgggccgacggcggcccgcgccctggccacccggttcggctccctg
gcggcgatccgcgccgccagtcaggaggaactggcccagaccgacggggtcggacccgtg
atcgccgagtcggtgatcgactggttcggggtcgactggcaccaggagatcgtcgagcgc
tgggccgccgccggagtgcggatggccgatgacacctccggggggccggcggccaccctg
gaggggctcaccgtggtggtcaccggcagcctggagggattcagccgggacgaggccaag
gaggccatcctgtcgcgcggcgggaaggccgccggatcggtctccaggaagaccgactac
gtcgtggtgggggccaacgccgggtccaaggagaccagggcgcgggaactgggccgcccg
atcctcgacgaggcgggattccgccatctcctggaccacggaccccagggggtgccgacg
gtcggctga
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