Apostichopus japonicus (Japanese sea cucumber): 139958610
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Entry
139958610 CDS
T10891
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139958610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ajj03041
]
139958610
Spliceosome [BR:
ajj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139958610
Complex C
U5 SnRNP specific factors
139958610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EFTUD2
GTP_EFTU
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
139958610
NCBI-ProteinID:
XP_071811909
LinkDB
All DBs
Position
18:complement(12464576..12489096)
Genome browser
AA seq
980 aa
AA seq
DB search
MDADLYDEFGNYIGPELDSDDEDDDDKDLDDDDEDVDQIDDMHADDAAIEDGVTTVDMAD
EHSVVLHEDKKYYPTAEEVYGPDVETIVHEEDAQPLTEPIIKPVKPKKFVLTEQKLPATV
YEMEFLADLMDHPDLIRNVTLAGHLHHGKTSFVDCIMEQTHPDLEQNDELPIRYTDTLFT
EQERGVSFKTQPVTVVLPDSKGKHFLLNIMDSPGHVNYSDEVTAAYRISDGVVIFVDAAE
GLMLNTERLIKHAVQEGLAVTICINKVDRLILELKLPPADAYYKLRHVVTEINSLLSTYS
EEADPLIVSPLLGNVCFASAQFCFCFTLESFAQIYSDTYGGFDHKELAKRLWGDMYFDPK
SRKFVKKAPSSQVQRSFVEFILEPMYKLFSQVVGDVDSSLPGVLGELGINLTREELKLNI
RPLLRLVSQRFFGDFTGFVDMCVKHIPSPLKNAKAKIQTTYTGPVESDLGESMCECDPEG
PLMLHTTKMYSTEDGVNFHAFGRVMSGTLHANQEVRVLGENYTIEDEEDSRITYIGRLWI
SEARYKVEVNRVPAGNWVLIEGVDEPIVKTATITESRGLDEVYIFRPLKFNTASVIKIAV
EPVNPSELPKMLDGLRKVNKSYPLVTTKVEESGEHIVLGTGELYLDNVMHDLRKMFSEID
IKVADPVVSFCETVVETSSLKCFAETPNKKNKLTMIAEPLEKGLAEDIENEVVQISWNRK
RLGEFFQAKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKGLLNSVKDSIVQGFQW
GTREGPLCDEPIRNVKFKILDAVIANEPIHRGGGQVIPTARRVAYSAFLMATPRLMEPYM
FVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQ
GQAFCLSVFHHWQIVPGDPLDKSIIIRPLEPQPANHLAREFMIKTRRRKGLSEDVSINKF
FDDPMLLELARQDVMLNYPM
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagatttgtacgacgagtttggcaactacatcggccctgaacttgacagtgat
gatgaagatgatgatgataaggacttagatgatgatgacgaagatgtggaccaaatagat
gatatgcatgctgatgatgcggcaatagaagatggagtcacaactgttgacatggcagat
gagcattctgtggttctccatgaggataagaaatattacccaacagctgaggaggtttat
ggccctgatgtagagaccattgtacacgaggaggacgctcaacccctgacagaaccaatc
atcaaaccagtgaagccaaagaaatttgtattgacagagcagaaattaccagcaaccgtt
tatgaaatggaattcttagctgacctgatggaccatccggacctcataaggaacgtgaca
ttagccggtcaccttcatcatggcaagacctctttcgtagattgtatcatggagcagact
catccagatctggaacagaatgacgaactcccgataagatacacagacactttgtttaca
gaacaagagaggggtgtcagttttaaaactcaaccagtgactgttgttcttcctgacagt
aaaggaaaacacttcttactcaatattatggactcaccaggtcatgtgaactattctgat
gaagtcacagcagcataccgcatctcagacggagttgtaatcttcgtggatgctgcagag
gggctgatgttgaatacagagcgattgatcaagcacgctgtccaggaaggcctggccgtc
accatctgtattaacaaagtagatcgattgattcttgagctcaagctacctcctgcggat
gcttactacaaactgagacacgtcgtcactgaaatcaattctctgctgagtacgtattct
gaagaagcagacccattgattgtcagcccactccttggaaacgtctgctttgctagtgct
cagttttgtttctgcttcacactggaatcatttgcacagatctacagtgacacctatgga
ggctttgaccacaaggaactagcaaagagactatggggtgatatgtactttgacccaaag
tcgagaaagtttgtcaagaaggcaccatccagtcaggtccaaaggagctttgtggagttc
attctggagccaatgtacaaactcttctcacaggtggttggtgatgtggactccagtctt
cctggagtactcggtgagcttggtattaacctcactcgggaagaactcaagcttaacatc
agaccgttgttgagacttgtctcacaaagattctttggagacttcacaggttttgtggat
atgtgtgtgaaacatataccatcacccttgaagaatgccaaggctaagatccaaaccaca
tacacaggtcctgtggagtcggaccttggcgaatctatgtgtgagtgtgatccagagggc
cctttgatgcttcatactacaaagatgtacagtacagaggatggggttaattttcatgcc
tttgggagagtgatgagtggtacccttcatgctaaccaggaggttagagtcctcggagag
aactataccatcgaagatgaagaggattccagaataacctacataggaagactctggatt
tcagaagctaggtacaaagttgaggttaaccgagtaccagcgggtaactgggtcctgatt
gagggcgtagatgaacccatcgtcaagacagctacaatcaccgagagccgaggattagac
gaggtttacatattcaggcctttgaaatttaacactgcatcagtgataaagattgctgtg
gagcccgtcaacccttccgagctgccaaaaatgctggacggtttacggaaagtcaacaag
agctacccactggtcacaacaaaggttgaggaatctggagagcatattgtgttggggaca
ggagagttataccttgataatgtcatgcatgacctgagaaaaatgttctctgagatagac
atcaaggttgctgacccagtggtctcattttgtgaaacagttgttgagacatcttctctg
aagtgctttgctgaaacaccaaacaagaaaaataagttgacaatgattgcagaacctctg
gagaaaggactggctgaggacattgagaatgaagtagttcagatttcttggaacaggaag
aggctcggtgaattctttcaagccaagtatgactgggatctgttggctgctaggtccatc
tgggcctttggaccagacagcactgggcccaatattctggtagatgataccctaccctct
gaggtcgacaaaggtttgctaaattctgtgaaggacagtattgttcaaggcttccagtgg
ggtacaagagaaggtcctctctgtgatgaacctattcgcaatgtcaagttcaagattcta
gatgctgtgatagctaacgaacccattcataggggtggaggacaggtcattccaacagcc
agacgtgtcgcttattcagcattcctcatggctacacccaggttaatggagccatacatg
tttgtggaagtacaggcaccagctgattgtgtgtctgcagtttacactgtgctagctaag
agaagaggtcatgtgacacaagatgcacccgtgccaggttctccattgtatacaataaag
gcgttcattccagccattgattcgtttggttttgagaccgatttacgaacacatacacaa
ggacaggccttctgcttgtcagtcttccatcattggcagattgttcctggtgatccgtta
gacaagagcattatcatcagacctctggagccgcagccagccaaccatttggccagggaa
ttcatgatcaagaccagacgcagaaagggtctgagtgaagacgtatccattaacaagttc
tttgacgatcctatgttgttggagttggccagacaggatgtcatgttgaactaccccatg
taa
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