Apostichopus japonicus (Japanese sea cucumber): 139960336
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Entry
139960336 CDS
T10891
Name
(RefSeq) TNF receptor-associated factor 6-B-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj04120
Ubiquitin mediated proteolysis
ajj04140
Autophagy - animal
ajj04144
Endocytosis
ajj04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139960336
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139960336
04140 Autophagy - animal
139960336
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
139960336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ajj04131
]
139960336
04121 Ubiquitin system [BR:
ajj04121
]
139960336
Enzymes [BR:
ajj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139960336
Membrane trafficking [BR:
ajj04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
139960336
Ubiquitin system [BR:
ajj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
139960336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
zf-TRAF
MATH_2
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-TRAF_2
zf-C3HC4_3
Sina_ZnF
RING_XB3-XBAT31
zf-Nse
TRAF3_RING
zf-RING_6
zf-RING_5
TRAFD1-XIAF1_ZnF
Zn_ribbon_ACC
Motif
Other DBs
NCBI-GeneID:
139960336
NCBI-ProteinID:
XP_071814740
LinkDB
All DBs
Position
19:complement(13086650..13097832)
Genome browser
AA seq
468 aa
AA seq
DB search
MPSQSRNSSTSSVRTARSSRSSKLASVEEKYGFEANFEPSLDKKYTCPVCLAGLREPVQT
KCGHRFCRACIKKACGSQAVTKCPIDKIIFDLKTELFEDLAVKREVLSQKVLCVNKERGC
SWTAELRYLEEHGDQCEFALVACQNGCGEEFIQQHAEQHGKECPLRIITCSYCKENIVHR
DLTPHFQVCPRHPVSCSLCGKTDLLREQLKAHLDCDEGDCPDVVVPCSFQEMGCNEQVKR
DLLSAHVQDATQHHFQLMVSYTRGLKSQVQSHMDTMRETHEICNQLICEQADLARQITEQ
NKQIGHQAALLREVQQIGHSGVLYWKVELPSQNYTNPLLSPPFYTSQPGYKFRLCLELRG
HVARSETHASLFVMMCRGEYDDQLFFPFGGVCHVTVFNQSHSRAVSSDQHLTTTIECQNL
TRAETDNCQTQKRGRLRFMKTDTLIRAPYCLNRELFIRADMATFCASA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgccatcccagtcgagaaatagctctaccagctctgtgcgaacagccagaagttcccgt
tcatcaaagttggctagcgtagaagaaaaatatggatttgaagccaattttgagccaagt
ctagacaaaaagtatacttgccccgtttgcctcgcgggactgagagagccagttcagacc
aagtgtgggcacaggttctgtcgtgcatgtatcaaaaaagcttgcgggtcacaggcagta
acgaaatgtccaattgacaagattattttcgatcttaaaactgagctatttgaggacctg
gctgtgaagcgagaggttttatctcagaaagtgttatgcgtaaataaagaaagaggttgt
tcatggaccgccgagttacgatatcttgaggaacacggtgatcaatgcgagtttgctctg
gtcgcatgtcaaaacggctgtggagaggagtttatccaacagcatgctgagcaacatggc
aaagaatgtccgctgcgaattattacttgttcttattgcaaagaaaacatcgttcatcgt
gatttgacgccacattttcaagtatgtcctcgtcatcctgtcagctgttcgttgtgtgga
aaaaccgatttgttgagggaacagttaaaggcgcatctcgactgcgatgagggtgactgc
ccagatgtggtcgtaccgtgttcttttcaagaaatgggttgcaatgaacaggttaagaga
gacctcctttctgcgcatgtccaagatgccacacaacatcattttcaattgatggtatct
tacacacgcggcttgaagagccaggtccaatcccacatggatactatgcgagagacacat
gaaatatgcaaccagctcatctgtgaacaagctgatctagcccgccagataaccgaacaa
aacaaacaaatcggccatcaagcagctctattacgagaagtccaacaaatcggccattca
ggtgtactgtactggaaagtcgaattaccgtcccagaactacaccaaccccttacttagc
ccaccattctataccagccagcccggctacaagttcaggctttgcctcgagttgagaggt
cacgtcgctagatccgaaacccacgcctccttatttgtgatgatgtgccgaggagagtac
gatgaccagctattctttcccttcggtggcgtatgtcacgtgactgtgttcaaccaatca
cattcacgtgctgtgagttctgatcagcacctaacgacgaccatcgagtgtcaaaatttg
acacgggcggaaactgacaattgccaaacccaaaagagagggcgtctccgatttatgaag
actgatacattaatcagggctccatattgtctcaacagagagctgtttatcagagcagat
atggctaccttctgcgcaagcgcgtaa
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