Apostichopus japonicus (Japanese sea cucumber): 139969820
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Entry
139969820 CDS
T10891
Name
(RefSeq) TNF receptor-associated factor 6-like
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
ajj Apostichopus japonicus (Japanese sea cucumber)
Pathway
ajj04120
Ubiquitin mediated proteolysis
ajj04140
Autophagy - animal
ajj04144
Endocytosis
ajj04517
IgSF CAM signaling
ajj04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ajj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139969820
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139969820
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139969820
04140 Autophagy - animal
139969820
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
139969820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ajj04131
]
139969820
04121 Ubiquitin system [BR:
ajj04121
]
139969820
Enzymes [BR:
ajj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139969820
Membrane trafficking [BR:
ajj04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
139969820
Ubiquitin system [BR:
ajj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
139969820
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
TRAF3_RING
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-RING_5
U-box
Sina_ZnF
zf-TRAF_2
RING_XB3-XBAT31
zf-RING_6
ACE1_N
Motif
Other DBs
NCBI-GeneID:
139969820
NCBI-ProteinID:
XP_071831208
LinkDB
All DBs
Position
7:complement(23755363..23805346)
Genome browser
AA seq
569 aa
AA seq
DB search
MNPRSFETYEGQSRLGPLQQPSGPGPPLMASSLPNQSLLLSHSTQDDNQGGWDFTFSPAL
DSKYECPICLMCLRDPWQTGCGHRFCKSCIQRSLREAGPRCPVDNAPLTEQTMFPDQFAK
REIMSLLALCPFKDKGCKEKIELRLMLTHEENCSFRMISCPHLCGKEVRRLSFEEHVRVL
CPKIPVGCEQCGKQIAKDMLEKHSENCSKASIQCQHCGQSVLRQEEKVHIDQTCPKVVVA
CRFKTFGCQTELLRERMEFHMRDSVYQHIVLLANGVESLNMTGAHRLTESDDYGDYSGLP
HHQPNMSEYGMPSATSFGMKGSKGKSDYQSYMEPLAKGHSSAAGGPMGPPLPSLLHAKDS
YSPQELSQYMEHILKWTHAMQERERKQTKKIQDLEHRLLHVEKNYKHNQAHTNRFCNGTF
IWRLQNYMKMRDDAMKGATSVQHSDGFYTALYGYKLCIRVNINATDSIRGAYISLFVHFM
KGEYDNIVEWPFKGCISLSILDQTEDCLKRKHLRETLIAKSELLAFHRPTSYRNHKGFGY
MEFAPLSVLENGSYLKNDSFYIKVEVNTG
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaatcctcgcagttttgagacatacgagggccagtctcgactgggtcccctacagcag
ccttcagggcccggtccacctttgatggcttcatcattgccaaaccaatctctgttgctg
tcccattcaactcaggatgacaaccaaggcggttgggactttacattctccccagccttg
gattcaaagtatgaatgtcccatctgtctgatgtgtcttcgagatccttggcagacaggc
tgcggtcatagattctgtaaatcttgtatacagcgttcactcagggaagctggccccaga
tgtcctgttgacaatgcacctctcactgagcagacgatgtttccagatcaattcgccaaa
cgggagatcatgagtttactggcattgtgcccgttcaaagacaaaggatgtaaagagaag
atcgagctgagactaatgttgactcatgaagagaactgctcttttagaatgatcagctgt
cctcacctatgcggtaaggaagtccgtcgactgtcgttcgaggagcatgtccgtgtgcta
tgtcccaagatacctgtcggttgtgaacagtgtgggaagcaaatcgcaaaagatatgttg
gagaaacacagcgaaaactgctccaaagccagtattcagtgccagcattgcggacagtct
gttctacgacaggaggagaaggtccacatagaccagacgtgtcctaaggtggtagtcgct
tgtcggtttaaaacgtttggttgtcaaacggagcttcttcgagagagaatggagttccat
atgagggactcagtctatcaacatatagtgttgcttgctaacggagtggaatccctgaac
atgaccggagcacacaggttaacagagtcggacgattacggcgattacagtgggcttcca
caccatcagccgaatatgtccgaatatggaatgcccagtgctacgtcgttcggtatgaaa
ggctccaaaggcaaatcagattatcaaagttatatggaaccactggcaaagggacacagt
agtgctgctggtgggcccatgggtccacctctacccagtttattacatgctaaagatagt
tacagtccacaggagcttagccaatacatggaacacatattaaagtggacgcatgcgatg
caggagcgggaaaggaagcagaccaagaagatacaagacctcgagcacagactgctccac
gtggagaagaactacaaacataatcaggcacacacgaaccgattctgtaacggcacgttc
atctggagacttcagaactacatgaagatgcgtgacgacgcaatgaagggtgccaccagc
gtgcagcacagcgacggcttctacacggcgctctacggctacaaactctgcatccgggtg
aacattaacgccacggatagtatcagaggcgcctacatctctctctttgtgcatttcatg
aagggagagtacgataacattgtcgagtggcccttcaagggctgtatctctctttccatt
ctagaccaaacagaggactgcttgaaacggaagcatctccgcgagacgctcatcgccaag
tccgagctgctggccttccatcgtccgacctcttatcgtaatcacaagggattcggttac
atggagtttgctccgttatccgtcctggagaatggttcttatcttaaaaacgactccttt
tacatcaaagtagaggtaaacactggctag
DBGET
integrated database retrieval system
