Artibeus jamaicensis (Jamaican fruit-eating bat): 119048207
Help
Entry
119048207 CDS
T07223
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ajm
Artibeus jamaicensis (Jamaican fruit-eating bat)
Brite
KEGG Orthology (KO) [BR:
ajm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ajm03036
]
119048207 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
ajm03400
]
119048207 (SMCHD1)
Chromosome and associated proteins [BR:
ajm03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
119048207 (SMCHD1)
DNA repair and recombination proteins [BR:
ajm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
119048207 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_hinge
Motif
Other DBs
NCBI-GeneID:
119048207
NCBI-ProteinID:
XP_053520145
LinkDB
All DBs
Position
Unknown
AA seq
2002 aa
AA seq
DB search
MAAAGGGGGPSVGTGEGGGGDGCRNVYLFDRREKESELGDRVVQVGERSDYSEFRASVCQ
TLGISPEEKFVITTTSRKEITFDNFDETVKDGVTLYLLQSVSQLLLTATKERIEFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSCNTGIRRIQIKLHFDETQGKPAVAV
IDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKESIYSGYIRNRKPSDSVHITNDD
ERFLHYLISEEKEKDSFTAVVITGVQSEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEK
RTSKEVGPFSNIDIEISMFEKGKASKIVNLRDIQDDMQTLYINTATDSFEFKAHVEGDGV
VEGIIRYHPFLYDRETYPDDPCFPKLKDEDDDDDCFILEKAARGKRPIFECFWNGRLIPY
TSVEGFDWCTPPKKKGLAPIECYNRISGALFTNDRFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRSDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTVKTLPLFYGSIEKFFLYGDHDGEVYATGGEVQIAMEPRALYDETRT
VPIAKLDRTVAEKTIKKYVEDEMARLPDRLSVTWPEGDELLPNEIRPAGTPIGALRIEIL
NKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQ
KLGSYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDSPFRIGVPFSI
PLEFQDEFGHTTQLINDIQPVLEASGLSLQYEELTKGPNCVIRGVTAKGLVNSCQGKNFN
LKVVLPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQ
PKLVVHCKFSGAPNLPLYTVDCSSSGTSILSGSAIQVQNIKKDQTLKAKIEIPSCKDVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMHNLIFQMYDEGEREIHV
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELRGGKTVQMGQELQGEIVVIVTDQYGNQIQAFSPSSLSSLGIAGNGLDN
SQLKTTFQENSQSISVRGIRFMPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLVDWP
EVKESIPVINGRELQNPFIVQLCDQWDNPAPVPQVKINVIKPNNLKLTPSNQQHKTDERG
RANLGVFSVYAPRGEHTIQVKAIYNKSTIEGPVIKLMILPDPEKPIRLNVKYDKDASFLA
GGTFTDFMITVISEDDSIIKNINPARISMKMWKLSNNGNRPSANAETFSCNKIKDNDKED
GCFYFRDKAIPNKVGIYCIQFCFMMDKANILNSEQIIVDIQPNQPVKLVPKIQPATPAVS
NDHSVANRTLVRDLHLIITDDFNNQTGIDLVGTVIATIKGSNEEDTDTPLFTGKVRTLEF
PFVKGSAEITSLVLAENSPGKDSTEYFIIFEPQLPALSRTLESYILPFMFSDDVKKQQQL
LAFAKQKDKLSRSIEIYRGVFETSRQLIDEMKCQVEGAKLKEAQLRNELKTHHIDIPTTQ
PVPHIEALLKRKILDQEELKKKPRRSCTLPNYTKSSGNVLGKIAHLAQIEDDRAAMVISW
HLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHYRNGKLYFKP
IGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRD
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGEQIDLLQQYRNAVDKLNSLT
KDLNSELEYLQSPEMKKKKHELDEQEKNLKLVEQQLAITLTPKCNDSLRHPTKVEMTDCP
IPPKRVRREVIRQNRTITKTNV
NT seq
6009 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcaggcggcggcggcgggccttctgtagggaccggagagggcggcggaggc
gacggctgcaggaacgtgtacttgtttgaccggcgcgagaaggagtcggagctcggcgac
cgggtggttcaggtcggggagcgctcggactactcggagttccgcgcctctgtgtgtcag
acacttggcatttcacctgaggaaaaatttgtaattacaacaacaagtaggaaagaaatt
acctttgataattttgatgaaactgttaaagatggagttactctataccttctacagtca
gtcagtcagttactactaacagctacaaaagaacgaattgaattcctgcctcactatgac
acactggttaaaagtggcatgtatgaatattatgcaagtgaaggacaaaatcctttgcca
tttgctcttgcagaattaattgacaattcattgtctgctacttcttgtaacactggaatt
agaagaatacagattaaattgcattttgatgaaacacaaggaaaacctgctgttgcagtg
atagataatggaagaggaatgacctctaaacaacttaacaactgggctgtgtataggttg
tccaaatttacaagacaaggtgactttgaaagtgatcattcaggatatgttcgaccagta
ccagtgccacgaagtttaaatagtgatatttcctattttggtgttgggggcaagcaggct
gttttctttgttggacagtcagccagaatgataagcaaacctgcagattcccaagatgtt
catgaacttgtgctttctaaagaagattttgagaagaaggagaaaaataaagagtcgata
tatagtggatatattagaaacagaaagccatctgattctgttcacattacaaatgatgat
gaaagatttctacattatcttatctcagaggagaaggaaaaagatagctttactgctgtg
gttatcacaggggtacaatcagaacacatacagtacttgaaaaattattttcatctttgg
acaagacagttagcgcatatttatcattactatattcatggccccaaaggaaatgaaaaa
cgtacatcaaaagaagttggacctttcagcaacattgatattgaaatttctatgtttgaa
aaggggaaggcatctaagatcgtcaacctaagggatatacaagatgacatgcagacgttg
tatataaacacagcaactgatagttttgagttcaaagctcacgtggaaggagacggtgta
gtggaagggattatccgatatcaccctttcttatatgatagagaaacttaccctgatgat
ccgtgctttccaaaattaaaagatgaagatgatgacgatgattgttttatacttgagaaa
gctgcaagagggaaaaggcctattttcgaatgtttttggaatggacgactaataccatat
acatctgttgaaggctttgactggtgtactcccccaaagaagaaaggacttgcaccaatt
gagtgttacaatagaatatctggtgcattattcactaatgacagattccaggtcagcaca
aataaactgacttttatggatcttgagctaaaattgaaagataagaacaccctttttaca
aggattttaaatggacaggagcagcgcatgaaaattgacagagaatttgctttatggctc
aaggactgtcatgaaaagtatgacaaacaaataaaatttacactttttaaaggaataatt
acacgttctgatcttccttctaaaaagcagggcccctgggccacgtactcagcaatagaa
tgggatggaaaaatatacaaagcaggacagctggtcaagacagtgaagacacttcctctc
ttttatgggagcatagaaaaattttttctttatggtgatcatgatggagaagtttatgct
actggaggagaggttcaaattgcaatggaacctcgagcactatatgatgaaacaagaact
gtgccaattgcaaagctggataggacagttgctgagaaaaccataaaaaaatacgtagaa
gatgaaatggcaaggctccctgatagattgtcagtaacttggcctgaaggagatgaatta
ttgccaaatgaaattaggcctgctggaacccctattggtgcattaaggattgaaatactg
aataaaaaaggagaagcaatgcaaaagcttccaggaacaagtcatggagggtcaaagaaa
ctcctggttgagctcaaagttatattacattcttcaagtggaaataaagaaatcatttca
catattagtcaacatggaggaaaatggccttactggtttaaaaaaatggaaaatattcag
aagttggggtcttatacattgaaattacaagttgtgttgaatgaaagtaatgcagacact
tatgctggaagaccactaccatctaaagcaattaaattttctgttaaagagggtaagcca
gagaaattttcatttggtcttctggattctccttttcgcattggagttccattcagtatt
cctctggaatttcaggatgaatttggtcatactactcaactaataaatgatattcagcct
gttcttgaagcaagtggtttatctttacaatatgaagaactaaccaagggaccaaattgt
gtaattcgaggtgttacagctaagggccttgtaaactcttgtcaaggcaagaattttaat
ctgaaggttgttcttccgggtttaaaagaagactcacagattttgaaaattagattacta
ccaggtccccctcatcgattgaaagtaaaacctgattctgaaattttagttatagagaat
ggaacagctttcccatttcaggtagaagttttggatgaatcagacaacataacagcacaa
ccaaaattggttgttcattgtaagttttcaggtgctcctaaccttccactctacactgtg
gattgtagtagttctggaaccagtattttatcaggatctgcaattcaagttcaaaatatc
aaaaaagaccagacgctgaaagctaaaattgaaatacctagttgtaaagatgtggcacct
gtggagaaaactattaagttgcttcccagtagccatgttgcaagattgcagatattcagt
gtggaaggacaaaaggcaatccagattaaacatcaggacgaggttaattggatagcaggc
gatgttatgcataatctcatttttcaaatgtatgatgaaggagaaagagaaatccatgta
acttcagctttagcagagaaaattaaagttaattggactcctgagattaacaaagaacac
ttgctacaaggactgcttcctgatgtacaagtaccaacatctgtaaaagatatgcgctat
tgccaggtttcatttcaggatgatcatgtgtctttggaaagtgcatttacagtaaggccc
ctgcctgatgaacctaaacatctaaagtgcgagttaagaggaggaaaaacagtacagatg
ggccaagaacttcaaggggaaatagttgtaatagttacagatcagtatggaaatcagatt
caagcattttcaccaagttctttatcttccttgggaattgctggtaatggacttgataac
tcacagttgaaaactacctttcaggaaaattcacagagtataagtgtaagaggcatcaga
tttatgccaggtcctcctggaaataaggatctttgttttacttggcgtgagttttctgac
tttattcgagtgcagctaatttctgggccaccagctaaacttctccttgtagactggcca
gaagtaaaggagtctattccagtgattaatggaagagaattacagaatcctttcattgtt
caactttgtgatcagtgggataacccagcacctgtaccacaggttaaaataaatgtcata
aaacctaacaatttgaagctcactccttcaaaccaacagcataaaacagatgaaaggggc
agggctaatttgggagtattcagtgtttatgcccctagaggagaacatactattcaagtg
aaagccatctataacaaaagtaccatcgaaggacctgtaattaagttaatgattcttcca
gaccctgaaaaacccattcgtctcaatgttaaatatgacaaagatgcttcctttttggca
gggggtactttcactgattttatgattactgttatttctgaagatgatagtatcattaaa
aatattaatccagcacgtatttccatgaaaatgtggaagctctctaataatgggaaccga
ccatcagcaaacgcagaaacatttagttgtaataaaataaaagataatgacaaggaagat
ggctgcttctacttcagggataaagcaattcctaataaagtgggaatatattgtatccag
ttttgttttatgatggataaagcaaatattcttaacagtgaacagattatagttgacatt
caacctaatcaacctgtgaagttagtacctaaaattcagccagctacgccagctgtttca
aatgatcactcagttgccaacaggaccctggttagagatttacatcttattatcacggat
gacttcaacaaccagactggaattgatttggttggcactgtaatagcaaccattaaaggt
tctaatgaggaagatactgatacgccactctttactggaaaagttagaacacttgagttt
ccctttgtgaaaggttcagctgaaatcacgagtctagtgctggcagaaaatagtcctgga
aaggatagtactgagtattttattatatttgaacctcagctaccagctttatcaagaaca
ttagaatcatatattctaccatttatgttttctgatgatgttaagaaacaacaacaactg
ctagcatttgccaaacaaaaggataaattatctcgatctattgaaatctatagaggtgta
tttgaaaccagcagacagcttattgatgaaatgaagtgccaagtagaaggagcaaaatta
aaagaagcccagttgcgaaatgaactaaaaacacatcatattgacattcctacaacacaa
ccggtaccacacattgaagcacttttgaaaagaaagatattagaccaggaagaactaaag
aaaaaacctagaagatcatgtactcttccaaactatactaaaagcagtggaaatgtttta
ggaaagattgcacacctggcacaaattgaagatgatagagctgcaatggttatttcttgg
catctggcaagtgatatggattgtgttgtcaccctgactactgacgctgcacgtcgtatc
tatgatgaaacccaaggccgtcagcaggtgttgccccttgattctatttataggaagact
cttccagattggaaaagacctctgcctcattaccgaaatggaaaattatattttaaaccc
attggagatccagtctttgcccgagatttgttaacatttccagataacatagaacattgt
gaaacagtatttggtatgctattaggcgacaccattattttggataatttggatgctgcc
aatcattatagaaaagaggttgtcaaaattacacactgtcctacgctgctcaccagagat
ggagatcgcattagaagtaatggaaagtttgggggtcttcagaataaagctcctccaatg
gacaaacttcgaggaatggtatttggagctccagtaccgaaacagtgcctggttttaggg
gaacaaatagatcttcttcaacaatatcgtaatgctgtggacaagttgaacagtctgacc
aaggaccttaatagtgaattagagtaccttcagtctcctgaaatgaagaagaagaaacac
gaacttgatgaacaagagaaaaatctgaagctagtagagcaacaactagctataactctc
acacctaagtgtaatgattcattacgtcatccaacaaaggttgaaatgacagattgtcca
attcctcctaaaagagtgagaagagaagttataagacaaaataggactataaccaaaaca
aatgtgtga
DBGET
integrated database retrieval system
