Arthrobacter jinronghuae: N2K98_05185
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Entry
N2K98_05185 CDS
T09565
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ajr
Arthrobacter jinronghuae
Pathway
ajr03030
DNA replication
ajr03410
Base excision repair
ajr03420
Nucleotide excision repair
ajr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N2K98_05185 (ligA)
03410 Base excision repair
N2K98_05185 (ligA)
03420 Nucleotide excision repair
N2K98_05185 (ligA)
03430 Mismatch repair
N2K98_05185 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajr03032
]
N2K98_05185 (ligA)
03400 DNA repair and recombination proteins [BR:
ajr03400
]
N2K98_05185 (ligA)
Enzymes [BR:
ajr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N2K98_05185 (ligA)
DNA replication proteins [BR:
ajr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N2K98_05185 (ligA)
DNA repair and recombination proteins [BR:
ajr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N2K98_05185 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N2K98_05185 (ligA)
MMR (mismatch excision repair)
DNA ligase
N2K98_05185 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N2K98_05185 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
UWX79598
LinkDB
All DBs
Position
1140778..1143045
Genome browser
AA seq
755 aa
AA seq
DB search
MSTAKTSPEPTDTEAAVESVSTDTPPAGDLREEYQTLAEQVRRYRFAYYNEDAPLVSDAE
FDRLYRRLEEIEALHPELVTNDSPTQEVGGEVSAAFSPVEHLQRMYSLEDVFSLDELDAW
VRKAEASVANIAPGAKIKWLTELKIDGLAVNLLYRNGELVRAATRGDGTTGEDITHNVLT
IASIPRTLKGEDLPAEMEIRGEVFIPSKEFAHLNETMVEAGKAPFANPRNAAAGSLRQKD
PDVTARRPLSMYVHGIGAREGLNVASQSETYELLKQWGLPTSPYYKVLDTYEEVLKYIAD
NGEHRHDLSHEIDGIVVKVDDFGLQRALGNTSRVPRWSVAYKYPPEEVNTKLLDIRVNVG
RTGRVTPYGMMTPVLVSGSTVEMATLHNQDVVKAKGVKIGDTVVLRKAGDVIPEIVGPVV
ALRDGSERDFVMPTHCPSCGTELKPAKEGDVDIRCPNSKSCPSQLRERVFHLAGRGAFDI
EALGWEAAIALTSPAEPETPPLTSEAGLFDLKIEDLADVRIERPKRVKGVVDGTELVPYF
YTKGTAKKPSVPSATTHKLFTELEKAKTQPLWRVLVALSIRHVGPTAARALAGAFGSMDA
IRAATEEQLAHVDGVGPTIAAALKEWFAEDWHREIVDAWAAAGVRMADERDESMPRTLEG
LTVVVTGTLPNFSRDEAKEAILTRGGKASGSVSKKTDYVVAGENAGTKLDKAEQLGVRVI
DEDGFRTLLAEGSVPGGPVPAAESGPESVPAGESE
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacagccaagacttcccctgaacccacggacaccgaagccgccgtcgagtcggtc
agcacagataccccgcccgcgggggacctgcgcgaggaatatcagacgctcgccgagcag
gtgcgccgctaccgcttcgcgtattacaacgaagacgcacccctggtttcggacgccgag
ttcgaccggctctaccgccgcctggaagagatcgaggcgctgcaccccgaactggtcacc
aacgactcacccacccaggaagtaggcggcgaagtatccgcggccttctctccggtggaa
cacctgcaacgtatgtacagcctcgaggatgttttctcccttgatgagctcgacgcctgg
gtacgcaaggccgaagcgtccgtggccaacattgcccccggtgcgaagatcaagtggctc
accgagctcaagatcgacggccttgcggtcaacctgctctaccgcaacggcgaactggtc
cgggccgccacccgcggggacggcaccacgggtgaggacatcacccacaacgtactcacc
atcgcctccatcccgcgcactctcaagggcgaggacttgccggcggaaatggaaatccgc
ggcgaggtcttcatcccctcgaaggaattcgcgcacctgaacgaaaccatggtggaagcg
ggcaaagcgccgttcgccaacccgcgcaacgccgccgccggttccctgcggcagaaggac
cccgacgtcaccgcccgccgcccgctgagcatgtacgtgcacggtatcggggcacgcgaa
ggactcaacgtggcgagccagtccgagacctacgaactgctgaagcagtggggactgccg
acgtcgccctattacaaggtgctggacacttacgaagaagtgctgaagtacattgccgac
aacggcgagcaccggcacgatctctcccacgaaatcgacggcatcgtggtcaaggtggac
gacttcggcctgcagcgcgcactgggcaacacatcccgcgtgccgcgctggtccgtggcc
tacaagtacccgccggaggaagtgaacaccaagctgctggacatccgcgtgaatgttggc
cgcaccggccgggtcacgccctacgggatgatgacgccggtgctggtctccggttcgacg
gtggaaatggccacgctgcacaaccaggacgtggtgaaggccaagggtgtgaagatcggc
gacacagtggtgctgcgcaaggccggtgacgtgatccccgaaatcgtgggccccgtcgtc
gcactccgtgacggcagtgaacgcgacttcgtgatgcccacccactgtccctcctgcggc
acggagctgaagccggccaaggaaggggacgtggacatccgctgccccaactccaagtcc
tgcccctcgcagctgcgcgagcgggtgttccacctggccggccgcggtgccttcgatatc
gaagcgctcggctgggaagcggctatcgcgctcacctcgccggccgagccggaaaccccg
ccgctcaccagcgaggcgggtctgttcgacctgaagatcgaagacctggcggacgtgcgg
atcgaacggccgaagcgagtcaagggcgtggtggacggcaccgaactcgtgccctacttc
tacaccaagggcaccgccaagaagccgtccgtgcccagcgccaccacgcacaagctgttc
accgagcttgagaaggccaagacccagccgctgtggcgggtccttgtggccctgtccatc
cggcacgtaggcccgacggcggcacgcgccctggcgggtgccttcggctccatggacgcc
atccgcgccgccacggaagagcagctggcgcatgtcgacggcgtcggcccgaccatcgcg
gccgccctgaaggaatggttcgccgaggactggcaccgcgagatcgtggacgcctgggcg
gccgccggggtccggatggccgacgagcgcgacgaatccatgccgcggacgctggagggc
ctgaccgtcgtcgtcacgggcacgctgcccaacttcagccgcgacgaagcgaaggaagcc
atcctgacccgcggcggcaaggcttcgggctcggtctccaagaaaaccgactacgtggtg
gccggggagaacgccggcaccaagctggacaaggccgagcagctgggggtccgcgtaatc
gacgaagacggcttccgcacgctgctggccgagggatccgtacctggcgggccggttccg
gctgctgaatccgggccggagtccgtgccggccggggagtccgaatga
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