Arthrobacter jinronghuae: N2K98_08790
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Entry
N2K98_08790 CDS
T09565
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ajr
Arthrobacter jinronghuae
Pathway
ajr03030
DNA replication
ajr03410
Base excision repair
ajr03420
Nucleotide excision repair
ajr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N2K98_08790 (ligA)
03410 Base excision repair
N2K98_08790 (ligA)
03420 Nucleotide excision repair
N2K98_08790 (ligA)
03430 Mismatch repair
N2K98_08790 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajr03032
]
N2K98_08790 (ligA)
03400 DNA repair and recombination proteins [BR:
ajr03400
]
N2K98_08790 (ligA)
Enzymes [BR:
ajr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N2K98_08790 (ligA)
DNA replication proteins [BR:
ajr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N2K98_08790 (ligA)
DNA repair and recombination proteins [BR:
ajr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N2K98_08790 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N2K98_08790 (ligA)
MMR (mismatch excision repair)
DNA ligase
N2K98_08790 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N2K98_08790 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
HHH_3
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
UWX77112
LinkDB
All DBs
Position
1880478..1882484
Genome browser
AA seq
668 aa
AA seq
DB search
MRNFNITAENYDQLVAQALSAARAYEQTDIEEMPDDRFDILLAAILAYETANGISASHGL
HSAVGHGGAEGGNVEHASPAGSLEKPGEEKVIEFAAAHPDAVVEPKIDGMAIIVRYRDGR
LFSAATRGDGYTGEDVTVKVRGVEGLPEAAGTGDFEVRGELYLNEANLGQANAIRAAAGQ
APFRNARNGVAGMLNKDGSTYAGLFSFAAYTLGGDADHLDAMQELSALGFTTARSLLPQV
VLAADDPMAAVAALGAVRSDLGFPIDGAVLKVPAAADRKALGEGPHAPKWAVAYKYPPVQ
VPAVIEDIELEIGKTGRLSIRARFTPVDVDGSTIGYASLHNVQDLLKKDIRVGDTVMAYK
ANDVIPQVHLPRADLRDPSSLPWEPPAGCPKCGRDFDKSTELWRCTNPECSVSGRISYAV
SRDAGLDIDGVGGSTGDALIEADLVRDVSDIFHLTEDQLANLRLGTGEPGADRLLGVKKA
KKIMAEIEQAKSRPLNRVITALAMRYAGRTFGRRLAARFGTMENLRCASVEELAGVEGIG
KAKAEVIHAALKDNGPVIDRLAAAGVNMGTPAAAPLKAARAARLTTPEGEAMNVVITGSL
KGSALGSLTRAGALELIEAHGGRAAGSVSKTTSLLVCAEPGSSKFLRAQELGIKIVTPDE
FAQILEGH
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacttcaacatcaccgcggagaattacgaccagctggtggcgcaggccctgtcc
gcggcgagggcctacgaacagaccgacatcgaggaaatgccggacgaccggttcgacatt
ctgctggcagctatcctggcctacgaaacggccaacggcatctccgcctcccacgggctg
cactcggctgtcggccatgggggagccgaaggcgggaacgtcgagcatgcctcgccggcc
gggtcgttggaaaagcccggcgaggagaaggtcatcgagttcgccgctgcgcatcccgat
gcagtggttgaaccgaaaatcgacggtatggcaattatcgtccgctatagggacgggcgc
ctcttttccgctgccacgcggggcgacggctacaccggtgaagacgtcaccgtcaaggtc
cgcggcgtcgaagggctgccggaagccgccggtacaggcgacttcgaagtccgcggggag
ctgtacctgaacgaggcgaacctgggacaggccaacgcgatccgcgccgcggcgggccag
gcgccgtttcggaacgcccgcaacggcgtagccggaatgctgaacaaggacggcagcacc
tacgccggactgttctccttcgcggcatacacgctcggcggggacgccgaccacctggac
gcgatgcaggaactttcagccctgggcttcacgacggcgcgttccctgctgccgcaggtc
gtcctggctgcggatgacccgatggcagcggtcgctgccctgggtgcggtccgttctgac
ctgggtttccccatcgacggcgccgtcctgaaggtgcccgctgccgcagatcggaaagcc
ctgggggagggaccgcatgcccccaagtgggcggtggcctacaagtacccgccggtgcag
gtgcctgccgtcattgaagacatagaactcgagatcggtaagaccggacggctgtccatc
cgtgcgcggttcacgcccgtggacgtggacggttccacgatcggatacgcctccctgcac
aacgtccaggacctgttgaagaaggacatccgcgtcggggacacggtcatggcgtacaag
gccaacgacgtcattccgcaggtccacctgccgcgggcggaccttcgggacccgtcttcc
ctcccgtgggaaccgccggccggctgtccaaaatgcggccgggacttcgataagtccacc
gagctgtggcggtgcacaaatcccgaatgctcggtttccgggcggatttcctacgcagtc
tcccgcgacgccgggttggatattgacggcgtcggcggctccaccggggacgcccttatc
gaagcggatctggtccgggatgtctcggacatcttccacctgaccgaggatcagctagcc
aacctgaggctgggcacgggagaaccgggtgcggaccggctgctcggggttaagaaggcc
aaaaaaatcatggccgaaattgagcaggccaagtcccggccgctgaaccgggttatcacc
gccctggccatgcgctacgccggacggaccttcggccgccggctggccgcacgcttcggg
acgatggagaacctccggtgcgcgtcggtggaagagctcgcgggtgtcgaaggcatcggc
aaggccaaggcggaagttatccatgcagcactgaaggacaacgggccggtcattgaccgc
ctggccgcggccggggtgaatatgggcaccccggcggccgcaccattgaaggctgccagg
gcagccaggctgaccacccctgagggggaggccatgaatgtggtcatcaccggctctctg
aagggcagcgcgctgggctccctgacccgggcgggtgccctggaactaatcgaagcccat
ggaggccgcgcagccggttcggtctcgaaaaccacgtccctcttggtgtgtgccgagccg
ggaagcagtaagttcctccgcgcgcaggagctgggcatcaagatcgtcacgccggacgag
ttcgcgcagatactcgaaggccactga
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