Acidovorax sp. JS42: Ajs_2083
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Entry
Ajs_2083 CDS
T00455
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ajs
Acidovorax sp. JS42
Pathway
ajs03030
DNA replication
ajs03410
Base excision repair
ajs03420
Nucleotide excision repair
ajs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ajs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ajs_2083
03410 Base excision repair
Ajs_2083
03420 Nucleotide excision repair
Ajs_2083
03430 Mismatch repair
Ajs_2083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ajs03032
]
Ajs_2083
03400 DNA repair and recombination proteins [BR:
ajs03400
]
Ajs_2083
Enzymes [BR:
ajs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ajs_2083
DNA replication proteins [BR:
ajs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ajs_2083
DNA repair and recombination proteins [BR:
ajs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ajs_2083
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ajs_2083
MMR (mismatch excision repair)
DNA ligase
Ajs_2083
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ajs_2083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
DUF4796_N
BRCT_2
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
ABM42259
UniProt:
A1W7N4
LinkDB
All DBs
Position
complement(2198316..2200511)
Genome browser
AA seq
731 aa
AA seq
DB search
MTEQSDLFPAPAPKGSALVATKIKALREQLNRWAHEYYVQDTPSVPDAEYDRAFQQLQAL
EGAYPDLVTPDSPTQRVLGAVLDGLTPVRHRVPMLSIRTETDTEASGAQAFDARVRRELK
LPPDAPPVEYVAEPKFDGLAMSLRYEGGRLVQAATRGDGEVGEDVTHNVRTIRQIPLSLP
AGVPPVLEVRGEVYMRRADFDALNERQREKGDKTFVNPRNAAAGAVRQLDSGITAQRPLS
FFAYGLGEVTPAAEGGPDFGTHFGMLQQLKEWGFPVAAQVQIAQGASELIAFHQRVGAER
DALPYDIDGVVYKVNSLALQRQLGFVTREPRWAVAHKYPAQEMVTRVEGIDVQVGRTGKL
TPVARLAPVFVGGVTVTNATLHNLFELRRKKVRVGDQVIVRRAGDVIPEVVGVVPAGAGL
AVLAGSDALVDAASSADGTAPAQPLAGPRQPYVPNFRMPRQCPICGSAVVREPGEVNHRC
SGGLFCPAQRKQAVLHFAQRRAMDIEGLGEKLVDQLVDGHVIRTLPDLYRLGLSSLAQLD
RMAEKSAQNVLDALDKSKRTTLARFLFGLGIRHVGEATAKDLARHFGQLDAIMDAGVEQL
LQVNDVGPVVAEAIHTFFAQPHNREVVEQLRACGVTWDESEPAAAATLPLAGMTVVLTGT
LPTLGRDAAKDLLESAGAKVAGSVSKKTHYVVAGADAGSKLAKAQELGIPVLDEDGLHAL
LRGTPPNAGGA
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacaatccgacctttttccggctcccgcgcccaaggggtctgcgctggtagct
acaaaaatcaaagcgctgcgcgagcagctgaaccgctgggcgcacgagtactacgtccag
gacacgccgagcgtgcccgatgccgagtatgaccgcgcgttccagcagttgcaggcgctg
gagggcgcttaccccgacctggtgacgcccgactcgcccacgcagcgcgtgctgggcgcg
gtgctggacgggctgacaccggtgcgccaccgcgtgcccatgctcagcatccgcactgaa
accgacacagaggccagcggcgcccaagccttcgacgcgcgcgtgcgccgtgaactgaag
ctgccgcccgatgcgccgccggtggaatacgtggccgaacccaagttcgacggcctggcg
atgagcctgcgctacgagggcgggcgcctggtgcaggccgccacgcgcggtgacggcgag
gtgggtgaggatgtgacgcacaacgtgcgcaccatccgccagatccccctgagcctgccc
gccggtgtgccgccggtgctggaggtgcgcggggaggtctacatgcgccgcgcggacttc
gacgcactcaacgagcgccagcgcgagaagggcgacaagaccttcgtcaacccgcgcaac
gccgccgccggcgcggtgcgccagttggactcaggcatcaccgcgcagcggccgctgtcc
ttcttcgcctacggcctgggcgaggtcacgccggccgccgagggcgggcccgacttcggc
acgcacttcggcatgctgcagcagctcaaggaatggggctttccggtcgcagcccaggtg
cagattgcgcaaggcgcttctgaactcatagcgttccatcagcgtgtgggggccgaacgg
gacgcgctgccctacgacatcgacggcgtggtctacaaggtcaacagcctggcactgcag
cgccagctgggctttgtgacgcgcgagccgcgctgggccgtggcccacaagtatccggcc
caggagatggtcacgcgcgtggaaggcatcgacgtgcaggtgggccgcacgggcaagctg
acgcccgtggcgcgactcgcgccggtgttcgtgggcggcgtcacggtgaccaatgccacg
ctgcacaacctgttcgagctgcgccgcaagaaagtgcgcgtgggcgaccaggtgatcgtg
cgccgcgcgggcgacgtgattcccgaggtggtgggcgtggtgccggcgggcgcaggcctg
gcagtgctggcgggctccgacgcgctggtggacgccgccagcagcgcggacggcaccgca
cccgcgcagccgctggcggggccgcgccagccctacgtgcccaacttccgcatgccgcgc
cagtgccccatctgcggcagcgccgtggtgcgcgagccgggcgaggtcaaccaccgctgc
tccggcgggctgttctgccccgcgcagcgcaaacaggcggtgctgcacttcgcccagcgc
cgcgccatggacatcgagggcctgggcgagaagctggtggaccagctcgtggacggccac
gtgatccgcacgctgcccgacctgtaccggctcgggctgtccagccttgcgcagctcgac
cgcatggccgagaagtccgcgcagaacgtgctggatgcgctcgacaaatccaagcgcacc
acgctggcgcgctttctcttcggcctgggcatccgccatgtgggcgaggccacggccaag
gacctggcgcgccacttcggccagttggacgccatcatggatgcgggcgtggagcagttg
ctgcaggtgaacgacgtggggcccgtggtggccgaggccatccacaccttcttcgcgcaa
ccccacaaccgcgaggtggtcgagcaactgcgggcctgcggcgtcacctgggacgagagc
gagcccgctgccgccgccacgctgcccctggcgggcatgaccgtggtgctgaccggcacg
ctgcccaccctgggccgcgacgcggccaaggacctgctggagtccgccggtgccaaggtg
gcaggttcggtcagcaagaagacgcactacgtggtggccggcgccgacgcgggcagcaag
ctcgccaaggcgcaggagctgggcatccccgtgctggacgaggacgggttgcatgcgttg
ctgcggggcacaccgcccaacgcaggtggggcctag
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