Advenella kashmirensis: TKWG_09590
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Entry
TKWG_09590 CDS
T02117
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aka
Advenella kashmirensis
Pathway
aka03030
DNA replication
aka03410
Base excision repair
aka03420
Nucleotide excision repair
aka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TKWG_09590
03410 Base excision repair
TKWG_09590
03420 Nucleotide excision repair
TKWG_09590
03430 Mismatch repair
TKWG_09590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aka03032
]
TKWG_09590
03400 DNA repair and recombination proteins [BR:
aka03400
]
TKWG_09590
Enzymes [BR:
aka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TKWG_09590
DNA replication proteins [BR:
aka03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TKWG_09590
DNA repair and recombination proteins [BR:
aka03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TKWG_09590
NER (nucleotide excision repair)
GGR (global genome repair) factors
TKWG_09590
MMR (mismatch excision repair)
DNA ligase
TKWG_09590
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TKWG_09590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
HHH
5_3_exonuc
RNA_ligase
HyaE
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFK62231
UniProt:
I3UB43
LinkDB
All DBs
Position
1669938..1672010
Genome browser
AA seq
690 aa
AA seq
DB search
MTQGKEQQLQAELERLRAQINTHNHAYHVMDAPTISDTEFDGLMQRLLAIEAEHPEWVNA
DSPSQRVGSAPLPFFDSVRHAVPMLSLGNAFSSEEVTAFDKRVSDALRAAGMLEPAEKVE
YNCEVKMDGLAISIRYENGRLVRAATRGDGLSGEDVTANIRTLRSVPLTLSPGFPAVLEV
RGEVLMHRSDFEKLNKQQAAAGDKTFVNPRNAAAGSLRQLDPRLTAKRPLRFFAYGWGQL
DGLVAPLPETHSGMLDWLSSLGLSVGKYRKRVTGADALLAFYEEIGQTRMSLPFDIDGVV
YKVNSLKAQTELGFVSRAPRFALAHKFAAEEATTVLLDIEVQVGRTGALTPVARLQPVFV
GGVTVTNATLHNEDEIRRKDVRIGDTVVVRRAGDVIPEVLRPVLEMRPADARLFAMVTQC
PVCGSAVERLPDEAATRCTGGLFCAAQRKQSLLHAAGRKALDIEGLGEKLIDQLVDHDWV
RSIADLYSLSVEKVMGLDRMGRKSAENLIAAIEESKHVELSRIVYALGIRHVGETTARDL
ARYFGSLDALIAADEAAFLQVNDVGPVVAESLRAFFAEPHNIAVLDALRAAGVTVKMPES
VKSTVLQGKTFVLTGTLPTLTRDEAGKLIMEAGGKVSGSVSKKPAMWLPVKRLAASWRKP
VICPCRYLTKKAAGLAQTISRPRSANADSA
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagggcaaagaacaacagttgcaggccgaactggagcgcctgcgtgcacaaatt
aatacacacaatcacgcgtatcacgttatggatgcgccaacaatcagcgatacggaattt
gacggcctgatgcagcggttgctggccatcgaggccgagcatcctgaatgggtcaatgcc
gattctccgtcgcagcgtgtgggtagcgcgccattgcctttttttgacagtgtccgtcac
gccgtacccatgctgtcgctgggcaatgcattcagcagcgaagaagtgactgccttcgac
aaacgcgtgagtgacgccctgcgtgctgccggcatgctcgagccggcagaaaaagtggaa
tataactgcgaagtcaaaatggacgggctggccatcagcatccgttacgagaacggtcgc
ctggtgcgcgccgccactcgtggtgatggcttgtccggcgaagatgtgactgccaatatc
cgcaccttgcgctcggtcccgctcacgctctcgccaggttttccagcggtgctggaagtg
cgcggcgaagtgctcatgcaccgcagcgactttgaaaaactcaacaaacaacaggccgca
gccggggacaagacctttgtcaatccgcgcaatgcggcggcaggtagcctgcgccagttg
gatccgcggcttacagccaaacggcctctgcgatttttcgcctacggctggggacaactg
gatgggcttgtcgccccgttgcccgagacccattccggcatgcttgactggttatcttcc
ctgggtttgtccgtgggcaagtaccgcaagcgcgtcaccggtgcagatgcgctgctggcc
ttttatgaagaaatcggccagacgcgaatgagtctgccctttgatattgacggggtggtg
tataaggtcaattcgctgaaggcacagacggaactgggctttgtttcgcgcgcaccccgg
tttgcgttggcccacaagtttgctgccgaagaagcgacgaccgtgctactggatatcgag
gtgcaggtgggccgcaccggggcgctcacgccggtggcccggctccagcctgtctttgtc
ggcggcgtgacagtaaccaatgcaaccctgcataatgaagacgaaatccgccgcaaggat
gtaagaattggcgataccgtggtcgtgcgccgggccggcgatgtgatcccggaagtgctg
cgtccggtactggaaatgcggccggccgatgcccggctgtttgccatggtgacgcagtgt
ccggtgtgcggctctgcggtggagcgtttgcccgacgaggcagcaacccgctgtacgggt
ggccttttttgtgccgcccagcgcaagcaaagcttgttgcatgccgcagggcgcaaggcc
ctggatattgaagggctgggtgaaaaactgattgaccagctggttgatcacgactgggtt
cgctcaatcgccgatctgtattcgctgtcggtagaaaaggtcatggggctggatcggatg
ggccgcaagtcggcagaaaacctgatcgcggccattgaagaaagcaagcacgtagagttg
tcccgcatcgtgtatgcgctgggcatccgtcatgtgggcgaaacaacggcacgggatctg
gcgcgttactttggctcgcttgatgccctgattgccgccgatgaagctgcttttcttcag
gtcaatgatgtcgggccggtagtggccgaatcgctacgggcattttttgctgagccccat
aatattgcggtgctcgatgcgctgcgcgcagccggcgtaaccgtcaaaatgcccgagtct
gtcaaaagcacggtgctgcagggcaagacatttgtcctgaccggtacattgccgacgctg
acgcgcgacgaagctggcaagctgatcatggaagccggcggcaaggtaagcggcagcgta
tcaaaaaaaccagctatgtggttgccggtgaagaggctggcagcaagctggagaaagccc
gtgatctgtccgtgccggtacttgacgaagaaggctgctggacttgctcagacaataagt
cggcccaggtcggccaatgccgacagtgcctga
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