Atribacter laminatus: RT761_02452
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Entry
RT761_02452 CDS
T07333
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alam
Atribacter laminatus
Pathway
alam03030
DNA replication
alam03410
Base excision repair
alam03420
Nucleotide excision repair
alam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RT761_02452 (ligA)
03410 Base excision repair
RT761_02452 (ligA)
03420 Nucleotide excision repair
RT761_02452 (ligA)
03430 Mismatch repair
RT761_02452 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alam03032
]
RT761_02452 (ligA)
03400 DNA repair and recombination proteins [BR:
alam03400
]
RT761_02452 (ligA)
Enzymes [BR:
alam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RT761_02452 (ligA)
DNA replication proteins [BR:
alam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RT761_02452 (ligA)
DNA repair and recombination proteins [BR:
alam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RT761_02452 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RT761_02452 (ligA)
MMR (mismatch excision repair)
DNA ligase
RT761_02452 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RT761_02452 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
HHH
Mustang
Motif
Other DBs
NCBI-ProteinID:
QPM69223
UniProt:
A0A7T1ANL5
LinkDB
All DBs
Position
2730657..2732678
Genome browser
AA seq
673 aa
AA seq
DB search
MERDTIRQEIEKLREIIRQHDYRYYVLNQPTVTDDEYDALMRKLQELEKNYPEYLTADSP
TQRVAGKPQDGFPPFLHFQPLLSLSNAVEEDDIREFDQRLQRLLNQNQAEYVVELKIDGL
AINLRYEEGILTHGATRGDGTVGEDVTPNIRTIKTIPLRLLGDKIPQVIEIQGEIFMGKN
AFNRLNQERIAKNEPPFANPRNAAAGSLRQLDPRMTATRELHLFVYGATLIESNLSPITH
WELLMYLKELGFMVNPYIQLVSSIEEVIDIHRKWEKKRKQLEYEIDGLVIKLNSLPDRSR
LGSTSKSPRWAIAYKFEATTEMTRILNIEVNVGRTGTLTPVAVLEPVNIGGVTVKRATLH
NEDELKRKDVRIGDWVLVGRAGDVIPEVVRVISEQRTGSEIIFQMPSTCPACHAPVKREI
GEAAWKCVNINCPAQRKEKINHWASRDAMDIEGLGEKLVSQLIETGLVQSISDLYRLKIE
ELIDLERMGPKSAENLIKAIGQSKTRELARFVYALGIPFVGSHVAQILTNHFSSLDQIIK
ASEEQFLIIDGIGPTVSQSILNFFSISENLHLIKELKALGVHPTQKKKEKSVKPQEFFQG
KTFLFTGTLSHFSRKEAEDLVVSRGGKVVKAISSQVNYLIVGEQPGSKREQAIKKNIPLL
TESEFEEKIQSDF
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagacacaattcgtcaagaaatcgaaaaattaagagaaattattcgtcaacac
gactatcggtattacgttcttaatcaaccaacggttaccgatgatgaatatgatgcctta
atgagaaagctacaggaattggaaaagaactatcctgaatatttaaccgccgactctccc
acacagcgggttgccggtaaacctcaggatggttttccgcctttcctgcattttcaacca
ctcctgagtcttagtaatgcggttgaagaagatgatattcgagaattcgatcaacggctg
caaaggcttctcaatcaaaaccaagctgaatatgtagttgaattaaaaattgatggtttg
gcaatcaacctcagatatgaagaaggaattcttactcatggagctacccggggagacgga
actgttggtgaagatgtgactccgaatattcggaccattaaaaccattccactgcgctta
ttgggtgacaaaattccccaggtcattgagatccagggcgaaatatttatggggaaaaac
gcttttaaccgtctcaaccaagaaagaattgctaaaaatgaacctccctttgccaaccct
cgtaatgccgctgcgggttcgcttcgtcaacttgatccgcggatgacagccactcgagaa
ctccatttgtttgtctatggagcaactttgattgaaagcaacctttctcccatcacccac
tgggaacttctaatgtatttaaaagaattgggattcatggttaacccctacattcagttg
gtatcttccatagaagaagtcattgatattcatcgtaaatgggaaaagaaacgaaaacaa
ttagaatatgaaatcgatgggttggtcattaaacttaattctttacccgatcgaagtcgt
ttgggatcgaccagcaagagtccccgttgggcaatcgcctacaagttcgaagcaacaact
gagatgaccagaatccttaacatcgaagtaaatgtaggacggacgggaacacttactccg
gttgccgtattagaaccggttaatatcgggggagttaccgttaagcgagctacccttcat
aatgaagacgaattaaagaggaaagatgtccgaataggtgattgggttttggtcggtcga
gccggagacgtcatccccgaagtggttcgggttatttcagaacaaagaaccggttcggaa
attatttttcaaatgccctcaacctgtccagcctgtcatgctccagtgaaaagagaaatc
ggagaggccgcttggaaatgcgtcaatataaactgtccggctcagcgaaaggagaaaatt
aatcactgggcttcacgggatgcgatggatattgaaggactgggggaaaaattagtcagc
caacttattgagaccggtttagttcaatccatttccgatctctatcgcttgaaaatcgag
gaattaattgatttggaacgaatgggaccgaaatcggcagaaaacctgattaaagccatc
ggtcagtctaaaacgagagaattagctcgtttcgtctatgctctgggaattccttttgtt
ggttcccatgttgcccagattctcaccaatcatttctcctcattagatcagattattaaa
gcgtcagaggaacaatttctaatcatagatggaatcgggcctacagtttctcaatcgata
ctcaatttcttttctatttccgaaaaccttcatttgatcaaggaattaaaagctcttggg
gtccatcctacccagaaaaaaaaggaaaaatcggtaaaaccccaagaattttttcaggga
aaaactttcctttttaccggaactctcagccatttttctcgtaaagaagccgaggatctg
gtggtttctcgaggaggaaaagttgttaaagctatttcttctcaggtgaattatctaata
gtgggagaacaaccgggttcaaaacgggaacaagcgataaaaaaaaacattcctctttta
actgaatcagagttcgaggagaaaattcaatcggatttttga
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integrated database retrieval system
