Aliarcobacter lanthieri: ALANTH_1077
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Entry
ALANTH_1077 CDS
T06854
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alan
Aliarcobacter lanthieri
Pathway
alan03030
DNA replication
alan03410
Base excision repair
alan03420
Nucleotide excision repair
alan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ALANTH_1077 (ligA)
03410 Base excision repair
ALANTH_1077 (ligA)
03420 Nucleotide excision repair
ALANTH_1077 (ligA)
03430 Mismatch repair
ALANTH_1077 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alan03032
]
ALANTH_1077 (ligA)
03400 DNA repair and recombination proteins [BR:
alan03400
]
ALANTH_1077 (ligA)
Enzymes [BR:
alan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ALANTH_1077 (ligA)
DNA replication proteins [BR:
alan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ALANTH_1077 (ligA)
DNA repair and recombination proteins [BR:
alan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ALANTH_1077 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ALANTH_1077 (ligA)
MMR (mismatch excision repair)
DNA ligase
ALANTH_1077 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ALANTH_1077 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
HHH
HHH_5
Nlig-Ia
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
QKF59187
LinkDB
All DBs
Position
complement(1076605..1078557)
Genome browser
AA seq
650 aa
AA seq
DB search
MTKEEYDKDIKTLITWAKAYYVYDEPIASDEEYDLLARECLEFEKNNPDLVNPNSPNKRV
GGIVLEGFSKANHLSRMWSQEDIFNTKELEDWIKRASKVGDNLEFFCQPKFDGVSLNLIY
EDGILKQAITRGDGQIGEDVTQNAYTIQSIPLKIDEKSLIEIRGEVVIKKVDFESINKDR
IKNNEVPFSNPRNASAGSLRQLDSNITAKRKLFFNVWGVGQNSLHFAKTSEMMKYIFSLG
FIEAPMQTLVKSIDEIENIYTNMVNKRDDFPMLLDGMVIKIDDIQTQEDLGFTQKFPRWS
CAYKFPALEKTTKLKDIILQVGRTGVITPVAVVEPVLIEGANIERATLHNFDEINRLDLK
INDSVIIIRSGDVIPKITKVLSDRRTGDEKEILKPTLCPDCSSELLVEDIMIKCQNLDCP
SRVVNSIIYFASKNCMNIDGLGDKIVEQLVREKKIFDILDLYSLKYEDLETLEGFREKKI
TNILNAIKNTKGSDLHRVINALGIEHIGEVASKQICFEFGLNIVDVTYEELIKLDGIGEQ
MANSILEFMRVNKDIVLKLFKIIEPIVVQKVEAEDNIFKNKIVVITGTMTKSRNEIKEIL
ENLGAKISSSVSKKTDFVIYGEDAGSKYDKAIELKIKLLTEDEMNELIKN
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaagagtatgataaagatataaaaacattgataacttgggcaaaagcttat
tatgtttatgatgaaccaattgctagtgatgaagagtatgatttattagcaagagaatgt
ttagaatttgaaaaaaacaatcctgatttggtaaatccaaattccccaaataaaagagtt
ggtgggatagttttagaaggattttcaaaagcaaatcatttaagccgaatgtggagtcaa
gaagatatttttaatacaaaagaactagaagattggataaaaagagcatcaaaagttggt
gataatttagaatttttttgtcaaccaaaatttgatggtgtttcactaaacctaatttat
gaagatggtattttaaaacaagcaataacaagaggtgatgggcaaataggtgaagatgtt
actcaaaatgcttatacaatacaatctattccactaaaaattgatgaaaaatctttaatc
gaaattcgtggtgaagttgtaataaaaaaagttgactttgaatctataaataaagaccga
ataaaaaacaatgaagttccattttcaaatccaagaaatgctagtgctggaagtttaaga
caacttgattcaaatatcacagcaaaaaggaaactattttttaatgtttggggagttgga
caaaatagtctacattttgcaaaaacttcagaaatgatgaaatatatattttccttagga
tttatagaagctcctatgcaaactttagtaaaatctattgatgaaatagaaaatatttat
acaaatatggtaaataaaagagatgattttccaatgcttttagatggaatggttataaaa
atagatgatattcaaacacaagaagatttaggttttactcaaaaatttccaagatggtca
tgtgcatataaatttccagcattagaaaaaactacaaaattaaaagatattatattacaa
gtaggaagaacaggagttataacaccagttgcagttgttgaaccagttttaatagaaggt
gctaatatagaacgggcaactctacataattttgatgagataaatagacttgatttaaaa
atcaatgatagtgtaatcataattagaagtggtgatgtaattccaaaaattactaaagtt
ttatcagatagaagaactggtgatgaaaaagagattttaaaaccaactttatgtcctgat
tgctctagtgaacttttagtagaagatattatgattaaatgtcaaaatcttgattgtcca
tcaagggttgtaaattcaataatttattttgctagtaaaaactgtatgaatattgatgga
ctgggagataaaatagttgagcaactagtacgtgagaagaaaatttttgatattttagat
ttatactctttaaaatatgaagatttggaaactcttgaaggttttagagaaaaaaagata
actaatattttaaatgctatcaaaaatacaaaaggaagtgatcttcatagagttataaat
gctttaggtatagaacatataggagaagtagcatccaaacaaatatgttttgaatttgga
ttgaatattgtggatgtaacatatgaagaacttataaaacttgatggtattggtgaacaa
atggcaaattcaatattagaatttatgagagtaaataaagatattgttttaaaactattt
aaaattattgaacctattgttgtacaaaaagtagaagcagaagataatatctttaaaaat
aaaatagtcgttataactgggactatgactaaaagtagaaatgaaataaaagaaatttta
gaaaatcttggagcaaagatatcttcaagtgtatctaaaaaaactgattttgtaatctat
ggagaagatgcaggaagtaaatatgataaggctatagagctaaaaatcaaacttttaact
gaagatgaaatgaatgaactaatcaaaaattag
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