Acanthopagrus latus (yellowfin seabream): 119004792
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Entry
119004792 CDS
T08233
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04115
p53 signaling pathway
alat04145
Phagosome
alat04148
Efferocytosis
alat04350
TGF-beta signaling pathway
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119004792
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119004792
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119004792
04148 Efferocytosis
119004792
09143 Cell growth and death
04115 p53 signaling pathway
119004792
09144 Cellular community - eukaryotes
04510 Focal adhesion
119004792
09142 Cell motility
04820 Cytoskeleton in muscle cells
119004792
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119004792
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119004792
Membrane trafficking [BR:
alat04131
]
Endocytosis
Phagocytosis
Opsonins
119004792
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119004792
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
TSP1_ADAMTS
EGF_CA
cEGF
EGF
Motif
Other DBs
NCBI-GeneID:
119004792
NCBI-ProteinID:
XP_036927897
LinkDB
All DBs
Position
16:complement(15001684..15010649)
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AA seq
1172 aa
AA seq
DB search
MMLCGIFLLLMLWTCEGARLAESRDDNSVYDLFDLTRVSKRNNGVSLVRGADPNSPAYKV
LNADLIPPVPNSALRDLLDSIQAERGFLLLVNLKQFRKTRGSLLTIEKTDGSGPIFEIIS
NGKANTLDVVYSTMDKQHVVCIEEADLATGHWKNITLFVQDDRVQLFVGCEEINVSEMDF
PIQKVLSQEVADIARLRIGKGAVTDKFHGVLQNVRFVFGTTLDAILRNKGCQSGAALTDV
MTLDNPVNGSSPAIRTDYTGHKAKDLQTVCGFSCEDIASMFKELKGLGVVVKQLSNELSK
VSRDSVELGNLMKIHSGICMHNGMVYKDKDEWTVDGCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCDSQRDQTEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRINSNCEGTSV
QTRDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGRDCLGEG
RQTEICQKSPCPIDGGWGPWSPWDTCTVTCNGGVQYRKRLCTDPVPKYGGKDCQGDGTMS
QVCNSQACPIDGCLSSPCFPGSRCTSFPDGSFKCGKCPLGYTGNGVTCKDIDECKAVPDA
CHTHNGVHLCENTEPGYNCLPCPTRFSGPQPYGRGVEQATAKKQVCKPRNPCQDGSHNCH
KNANCIYLGVFSESMFRCECRPGYAGNGHICGEDSDLDGWPNTDLLCVENATYHCKKDNC
PNLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDVGDRCDNCV
FEANTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL
EHNPDQIDSDSDRIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQVDSDGDGRGDVCKDDFDQDNVLDIYDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYDEFSAVDFSGTFFINTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLIHRPKSGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGLYVFSQEMVYFSDLKYECKDT
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgtggcatctttttgctgttgatgctttggacttgtgagggcgcaagattg
gcagagagtcgggatgataacagtgtgtatgacttgtttgacctcacccgggtgagcaag
agaaacaacggagtgagtttggtcagaggtgcagatcccaacagccctgcgtacaaggtc
ctgaacgcagacctgatccccccggtccccaacagcgccctcagggacctcctcgactcc
atccaggcagagaggggcttcctcctcctcgtcaacctgaagcagttcaggaaaacccgg
ggcagccttttgaccatcgagaagaccgacggatcgggacccattttcgagatcatctcc
aacgggaaggcaaacactctggatgtggtctactccaccatggacaagcagcatgtcgtg
tgcatcgaggaggcagatttggccaccggacactggaagaacatcacactgttcgttcag
gacgacagggtgcagctttttgttggctgtgaggagatcaatgtgtcagagatggacttt
cccatccagaaagtgctgtcccaggaggtggccgacatcgccaggctcaggattggaaag
ggagctgtgacagacaaattccatggagtgcttcagaatgtgcgctttgtctttgggacc
actcttgatgccatactgagaaataagggatgccagagtggagctgccttaactgatgtc
atgaccctggacaacccagtcaacggctccagccccgccattaggactgattacaccggc
cacaaagccaaagatctgcagactgtctgcggcttctcttgcgaggacatcgccagcatg
tttaaggagctcaagggactcggcgtggttgttaaacagctgtcgaacgagctcagcaaa
gtgtcaagggacagcgttgagttgggaaatctaatgaaaatccacagtggcatttgcatg
cacaacggcatggtgtacaaggacaaagatgaatggactgttgacggctgcacagagtgc
acctgccagaactctgctactgtgtgtcgcaaaatctcctgtcctctgatcccatgtgcc
aacgccaccgtgcccgacggagagtgctgccctcgttgtgattcacagagagaccaaacc
gaggatggttggtccccctggtctgaatggacccactgttctgtgacttgtggccgaggc
atccagcagcgcggacgctcctgcgaccgcatcaacagcaactgtgagggcacctctgtc
cagacccgtgactgctacccccaggaatgtgacaaacgcttcaaacaggatggtggttgg
agccactggtctccctggtcttcgtgctctgtgacctgtggcgagggggtcatcacccgg
atacgcctctgtaactccccaacaccccagatgggtggcagggactgcctgggagaggga
cgtcaaacagaaatctgccagaaatcaccttgtcctatcgatggtggttggggaccttgg
tcaccgtgggacacctgcactgtaacctgtaatggaggtgtccagtaccgcaaacgtctt
tgtactgaccccgtccccaaatatggaggaaaggattgtcagggtgatggtactatgtct
caagtatgcaacagccaggcctgccctattgatggatgtctctccagcccatgcttccct
ggatcacggtgcaccagcttccctgatggctctttcaagtgtggcaagtgtccgcttggc
tacactggaaatggcgtcacctgcaaagacattgatgagtgtaaggcggtccctgatgct
tgccatacacataacggagtccacctctgtgagaacaccgagcctggttacaactgtctg
ccctgccccacacgtttctccggtcctcagccctacgggagaggagtggaacaggcaact
gctaaaaaacaggtttgtaaaccccggaatccttgtcaagatgggagccacaactgccat
aaaaacgcaaactgcatctacttgggcgttttctccgagtccatgttccgctgcgagtgc
agaccagggtatgcagggaatggccatatttgcggagaggacagcgacctggacggatgg
cccaacaccgacctactgtgtgtggagaacgccacctaccactgcaagaaggataactgc
cccaaccttcccaactctggccaggaagatcatgacaaagatggcctgggtgatgaatgt
gaccatgatgatgacaatgatgggatccccgatgatagggacaactgcccaagagtgtac
aaccctgcccagtatgacgcagacagagatgatgttggcgaccgctgtgacaactgtgtg
ttcgaggctaacaccgaccaaaccgacactgacaacaacggcgagggtgatgcctgcgct
gttgacatcgatggcgacggcattctgaacgagaatgacaactgcccatatgtttacaac
gtggaccagagagatactgacagagacggagtgggagaccattgtgacaactgcccgctg
gagcacaaccctgatcagatcgactctgactcagatcgcataggagacaagtgcgacaac
aaccaggacattgacgaggatggtcaccagaacaacttggacaactgcccctacataccc
aatgccaaccaggctgaccacgacaaggatggcaagggcgacgcttgcgaccatgatgac
gataatgacggcattcctgacgacaaggacaactgcaggctggccttcaaccctgatcag
gtggactctgatggtgatggacgtggggatgtgtgcaaagacgattttgatcaagataat
gttctggacatctatgacgtatgcccagagaacttcgccatcagtgagactgacttccgc
agattccagatggttcctctggaccccaagggtacatcccagatcgaccccaactgggtg
gtccggcatcagggcaaggagctggtgcagactgtcaactgtgatcctggcattgctgtt
ggttacgacgagttcagcgcagtggatttcagcgggactttcttcatcaacacggacaga
gacgacgactacgccgggtttgtgtttggctaccagtccagctctcgcttctacacggtg
atgtggaaacagatcacgcagacatactggtcccacacgcccacaagagctcaaggttac
tctggcctgtcaatcaaagtggtcaactccaccaccgggcctggtgagcatctgaggaac
gccctgtggcacaccggagacaccccaggacaggtgcgcactctgtggcacgatcccaag
aacattggctggaaagacttcaccgcttacagatggcacctgatccacagacccaagagt
gggcttattagagtggtcatgtatgaaggcaagagaatcatggctgattctggaaacatc
tatgacaagacatacgctggtgggcgactaggcttgtacgtcttctctcaagagatggtt
tacttctcagacctcaaatatgaatgcaaagatacataa
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