Acanthopagrus latus (yellowfin seabream): 119012924
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Entry
119012924 CDS
T08233
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04115
p53 signaling pathway
alat04145
Phagosome
alat04148
Efferocytosis
alat04350
TGF-beta signaling pathway
alat04510
Focal adhesion
alat04512
ECM-receptor interaction
alat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119012924 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119012924 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
119012924 (thbs1b)
04148 Efferocytosis
119012924 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
119012924 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
119012924 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119012924 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119012924 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alat00536
]
119012924 (thbs1b)
Membrane trafficking [BR:
alat04131
]
Endocytosis
Phagocytosis
Opsonins
119012924 (thbs1b)
Glycosaminoglycan binding proteins [BR:
alat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119012924 (thbs1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
cEGF
Laminin_G_3
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
119012924
NCBI-ProteinID:
XP_036943051
LinkDB
All DBs
Position
22:10454005..10466747
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AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMLWTCEGARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKQDGSGPVFEVVS
NGKANTLDIVFSTENKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYAGCDEVNTAELDA
PIQSILTLETPASARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQSSMTTDTM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSNELRQLTD
ENKLIKTRFGIHSGVCIHNGIVHKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGKDCEGEGRQT
EKCQKSPCPINGNWGPWSPWDTCTLTCGSGSQIRKRLCNDPAPKYGGKECIGDAKETQFC
NKKACPIDGCLSNPCFAGAKCTSFPDGSWKCGKCPAGYTGNGIKCKDIDECKEVPDACFE
FNGVHRCENTDPGYNCLPCPPRYSGPQPFGKGVEQAAAKKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDSDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTAGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacagggatatttttgctattgatgctttggacctgtgagggtgcgagagtc
gcagagagtcgagacgacaacagcgtgtatgacttgttcgagctcgtccaagtccccagg
aagaaccacggggtcactctggtgaaaggagatgacccgtacagccccgcatacaagatc
ctcaacccggacctgatccccccggtccccgagagcgccttcagggacctgatcgattcc
atccacgccgagaggggattcctcctcctgctcaacttcaagcagttcaaacgcacccgg
ggaagcctcctgaccgtggagaagcaggacggctccggacccgtgttcgaggtcgtctcc
aacggcaaggcgaacaccttggacatagttttctccaccgagaacaagcagcaggtggtc
tccatcgaagatgtggatctggcgacgggccactggaagaatatcacgctgttcgtgcag
gaggaccgggcgcagctgtacgcgggatgcgacgaggtgaacaccgccgagctggacgcg
cccatccagagcatcctgacgctggagacgccggccagcgcgcggctcaggattggcaag
ggagccgtgaaggacaggttcatgggagtcctccaaaacgtgcggtttgtgtttggaaca
acactcgatgccatcctgcgcaacaaaggctgccagagctccatgacgactgacaccatg
atcctggagaacctcaacggctcctcggccatcagaacagagtacacaggacacaagact
aaagatctgcagatggtctgtggcttctcctgtgaggacctggtcagcatgtttaaggag
ctgaagggcctcggtgtcgtggtcaaggagctgtccaacgaactccgccagctgacggat
gagaacaagctgattaagacccgttttggcattcacagtggcgtctgcatccacaacggc
atcgtgcacaagaacaaagacgagtggaccgttgacgactgcaccgagtgcacttgtcag
aactctgctaccgtgtgccgcaagatctcctgccccctgatcccctgcgctaacgctact
gttcctgatggggagtgctgcccgcgctgtggaacgccgagcgactatgcagaggacggc
tggtcgccatggtctgaatggacccattgttctgtgtcatgtgggcggggcatccagcag
cgcgggcgctcttgcgaccgtatcaataacaactgtgagggcacctctgtgcagacccgc
gactgctacctccaggagtgtgacaagcgtttcaagcaggacggcaactggagccactgg
tcaccctggtcttcctgctctgtcacctgcggtgctggtgtcatcacccgtatccgcctc
tgcaactcccccacccctcagctcggaggaaaggactgtgagggcgagggacggcaaacc
gagaagtgtcagaagtctccatgcccgatcaatggcaactggggaccctggtcaccatgg
gacacatgcactcttacctgtggaagtggttcccagattcgaaaacgcttgtgcaatgac
cctgcaccaaaatatggtggcaaagagtgcattggggatgccaaagagacccagttttgc
aacaagaaagcctgcccaattgatgggtgcttgtctaacccctgctttgctggagcgaag
tgcaccagcttccctgatggttcctggaagtgtggaaagtgcccagctggctacaccggc
aatggcatcaaatgtaaagatattgatgagtgcaaggaggtcccggatgcttgctttgag
ttcaatggtgtgcaccgctgtgagaacacagatcctggctacaactgtctgccctgccct
cctcgctattcgggaccacagccatttggcaaaggtgtggagcaggcggctgcgaagaaa
caggtgtgtactccccgtaatccctgcctcgatggaagccatgactgcaacaagaacgcc
cgctgtaactacctggggcactttgccgatcccatgtaccgctgcgagtgcaaaccaggc
tacgctggcaacggccatatctgcggagaggacacagatctggatggatggcccaacgct
gacttggtttgtgtggagaatgctacctaccactgcaaaaaggacaactgccccaacctc
cccaactctggacaggaagattacgataaggacgggattggagatgcttgcgacaatgat
gatgacaacgatggcattcctgatgatagagacaactgtccattcgtgtacaaccccagg
cagtacgactatgaccgtgatgatgtgggtgatcgttgtgacaactgcccctacaacagt
aacccagaccaaacagacacagacaacaacggagagggagatgcctgcgctgtggacatc
gatggagatggtatattgaatgagaaggacaactgcccctatgtgtacaatgttgaccag
agagactcagatctggacggagtgggagacatgtgtgacaactgccctctggaacataat
cctgatcaggtggattcagatgatgaccgtgtgggagacaagtgtgacagcaaccaggat
attgatgaagacggacaccagaacaacctggacaactgcccatacatccccaatgccaac
caggctgaccatgacaaggatggcaagggagatgcatgtgaccatgatgacgacaatgat
ggcatccctgatgacaaggacaactgcagactggccttcaaccctgaccaactggactct
gatggtgacggtcgtggagatgcttgcaaagatgactttgaccaagacaacgtacctgac
atctacgacgtgtgtccagagaactttgacattagtgagacagacttccgcaagttccaa
atggttcctctggaccccaaaggcacctcgcagattgatcccaactgggtggtccgccat
cagggcaaagaactggttcagacagtcaactgtgatcctggtattgctgttggttaccat
gagttcaattccgtggacttcagtgggactttcttcatcaacacagagagggatgacgac
tacgccggattcgtgtttggttaccaatccagttccaggttctatgtcgtcatgtggaag
cagatcacgcagacgtactggtcaaataaacccaccaaagcccagggctactctggcttg
tccattaaagtggtcaactccaccactggcccaggagaacacctcaggaatgccctgtgg
cacacagggaatactgcaggacaggtccgcactctctggcatgacccaaagaatgttgga
tggaaggacttcactgcctacagatggcatctgatccacagaccaagaacaggacttatc
agagttgtgatgtacgagggcaagaagatcatggcagattctggtagcatctatgacaag
acatatgcgggcggcaggctaggtctttttgtcttctcacaagagatggtatacttctca
gacctcaagtatgaatgcagagatgtctaa
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