Acanthopagrus latus (yellowfin seabream): 119017781
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Entry
119017781 CDS
T08233
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04010
MAPK signaling pathway
alat04120
Ubiquitin mediated proteolysis
alat04140
Autophagy - animal
alat04144
Endocytosis
alat04620
Toll-like receptor signaling pathway
alat04621
NOD-like receptor signaling pathway
alat04622
RIG-I-like receptor signaling pathway
alat05132
Salmonella infection
alat05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119017781 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119017781 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119017781 (traf6)
04140 Autophagy - animal
119017781 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119017781 (traf6)
04621 NOD-like receptor signaling pathway
119017781 (traf6)
04622 RIG-I-like receptor signaling pathway
119017781 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119017781 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
119017781 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alat04131
]
119017781 (traf6)
04121 Ubiquitin system [BR:
alat04121
]
119017781 (traf6)
Enzymes [BR:
alat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119017781 (traf6)
Membrane trafficking [BR:
alat04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
119017781 (traf6)
Ubiquitin system [BR:
alat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
119017781 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
TRAF6_Z2
zf-C3HC4_4
zf-RING_5
RING_XB3-XBAT31
U-box
TRAF3_RING
zf-RING_11
DM
Prok-RING_4
zf-TRAF_2
Motif
Other DBs
NCBI-GeneID:
119017781
NCBI-ProteinID:
XP_036950704
LinkDB
All DBs
Position
4:complement(12543483..12552175)
Genome browser
AA seq
572 aa
AA seq
DB search
MACFDSSKGSLEEDSYEGAVGGELSGCALAMLEKERESLLSPSESPGTYISSTSASFPAA
VPPQGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDTGQRCPVDNE
MLSEDQLFPDNFAKREILSLTVRCPNSGCADKMELRHLENHLACCQFATVPCPQCQQSVW
KSHLEQHTTVECQRRPVSCQDCVATFVFEEKELHEQQCPFANVTCQYCEMDLIRDQMESH
CDTDCPKAPIACNFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFLRGLCLNGTTPKSL
WAQGPSVSSEDLGAAASAPACSGPRGAASCSGNNCAPSQPNEEMQRLREMDGRLVKQDHQ
LREVIILKETQAGQLAELRRRVSILEETVKELESQQCHGIFIWHLKGFSAHLRNQEAGQP
VVEHSPGFYTGRPGYKLCLRLHLQTPNAPRCSNYISLFVHTMQGAFDGQLTWPFQGTIRL
SILDQGPEGQHHTEVMETKPDLQAFQKPTIQRNPKGFGYVTFLHLHQLNQRSFVKDDTLL
IRCEVTPRFDNMVHREGPPVQPRGPEASVSRD
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggcttgctttgacagcagtaaggggagtctggaggaggacagctatgaaggagctgtt
ggtggagagctgtctggctgtgcattggcaatgctcgaaaaggaacgggagtcccttctc
agcccttcagagagccctggcacctacatcagcagcacctctgctagttttccagccgct
gtccccccccagggctatgatgtggagtttgacccacctctcgagagtaaatatgagtgc
cctatctgcctcatggctttgaggaatgccattcaaacgccctgtggtcaccgtttctgc
aagaactgcatcgagaagtccattcgtgatacaggacaaaggtgccctgtggacaatgaa
atgctgtcagaggaccaactgtttcctgataactttgctaaacgtgaaatcctgtcacta
actgttcgctgtcccaattctggctgtgctgacaaaatggagctccgacatttagagaat
catttagcatgctgtcagtttgccactgtgccttgcccacaatgccaacagtctgtgtgg
aagagccacctagagcagcacacaactgttgagtgccaaaggagacctgtgtcgtgccaa
gattgtgtggcaacctttgtttttgaggagaaagagctccatgaacaacaatgtcccttt
gccaacgtgacgtgccagtactgtgagatggatctgatcagagaccagatggaatctcat
tgtgatacagattgtccaaaagcacccatcgcctgtaacttcagcacctttggatgtaag
gaacggatgcagcgccacaacctggctcagcacatgcaggagttcacgcagatgcatatg
cgctatatggcggagttcttgcgtggcctttgcctcaatggcaccacacccaaatccctg
tgggcccaaggaccttctgtttcctctgaagatctaggagcagcagcatcagcaccagcc
tgtagtggacccagaggagctgcgagctgcagcggcaacaactgtgccccaagtcagcca
aacgaggagatgcagaggctcagggagatggatggacgattggtaaagcaagatcaccag
ctgcgtgaggtcatcattttaaaggaaacccaggctggccagcttgcagaactcagacgt
agggtttcgattctagaggagacagtgaaggagctggagtcccagcagtgtcacggtatc
ttcatctggcacctcaaaggtttctctgcacacctgcggaaccaagaagcaggtcagcca
gttgttgagcacagccccggcttctacacgggccgtcctggctataagctgtgcctgcgc
ttacacctgcagacccccaatgccccgcgctgctccaactatatctccctcttcgtccac
acaatgcaaggagcttttgatggccagctgacctggccattccagggcaccatccgcctt
tccatcctagaccagggccctgaaggtcagcaccacactgaagtgatggagactaaacca
gacctgcaggccttccagaagcccaccatccagcgcaaccccaaaggattcggctacgtc
acctttctgcatctgcatcagctgaatcagagatcctttgttaaagatgatactctgctt
atccgctgtgaggtgactccacgttttgacaatatggttcaccgtgagggaccaccagtg
cagcctagaggacctgaggcctcagtttcgagggactaa
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