Acanthopagrus latus (yellowfin seabream): 119019750
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Entry
119019750 CDS
T08233
Symbol
kdm2ba
Name
(RefSeq) lysine (K)-specific demethylase 2Ba
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
119019750 (kdm2ba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
alat03000
]
119019750 (kdm2ba)
04121 Ubiquitin system [BR:
alat04121
]
119019750 (kdm2ba)
03036 Chromosome and associated proteins [BR:
alat03036
]
119019750 (kdm2ba)
Enzymes [BR:
alat01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
119019750 (kdm2ba)
Transcription factors [BR:
alat03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
119019750 (kdm2ba)
Ubiquitin system [BR:
alat04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
119019750 (kdm2ba)
Chromosome and associated proteins [BR:
alat03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
119019750 (kdm2ba)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
119019750 (kdm2ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
DUF7885
PHD
Motif
Other DBs
NCBI-GeneID:
119019750
NCBI-ProteinID:
XP_036954488
LinkDB
All DBs
Position
5:5918676..5929602
Genome browser
AA seq
784 aa
AA seq
DB search
MALSLSGDDEEYDSESEQQRAANRPKPKMGPAAATPAPVKLPSNRSSSGARRRRTRCRKC
EACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCKEAGKEDTLEE
EEDKFNFMLMECSICNEIVHPNCLKVSDASGVVNDELPNCWECPKCNHAGKSGKVLKQKR
GPGFKYASNLPGSLLREQKPVKEEGDASSAAKRRPDREETPRYRPEEPLHRQPPLLSPCN
LPRPRPEDKLRKKRKLFDDDDDDDLGVRKKERSDDPYFSKLLHQIKTEEDDEDAYEEHNE
EGREHHFRSALERRGRFGDAEEDGEDKDSKNELLNPFIKTPIGDSDQSLCSSPQAGPSSE
GGSETQEKGPRPKARRKRRLPNRELSRELSKALNQEIQKTDDSPANENRQPLKVEPETEN
EEPKRLFRNGTELGDQRTHLKTKEMNGTPWELRHFYPSQITPLGFNRSTPTNRPVPPHSP
PKCVQMERHVIRPPPISPPPDRLPLKDGKTHVIQREVWMKVFGYLTHQELCVCMRVCKTW
NRWCCDKRLWTKIDLNRCTSITPLMLSGVVRRQPVSLDLSWTNISKKQLSWLINRLPGLR
VLKLSGCSWAAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKL
RNVEDLRLAGLDITDTSLRLISRQMPLLSNLDLSYCNHINDQSVNLLTAAGTTTRDSLTE
INLSVCNRVTDHSLNFFKRCGSICQIDLRFCKQVTKTACERFIAEMSVSVPFRLKEEKLL
EKSS
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggccttgtcattgagcggagacgatgaggaatatgattcagagtctgagcagcagcgt
gcggccaaccggccgaagcccaagatggggccagcagcagcgacgccagcccctgttaag
ctgccatccaaccgcagctcatccggagccaggcggagaaggacacgctgcagaaagtgc
gaggcgtgcctcaggaccgagtgtggagagtgtcacttctgcaaggacatgaagaagttt
ggagggccgggtcgcatgaagcagtcgtgcattatgagacagtgcatagccccggtccta
ccccacacagcggtttgtgtggtgtgtaaagaggcaggcaaagaagacacactggaggag
gaggaggacaagttcaacttcatgctgatggagtgctccatctgcaacgagatcgtccac
cccaactgtcttaaggtgagcgatgcctctggagtggtgaacgatgaactccctaactgc
tgggaatgtcccaagtgcaaccacgctgggaaaagtggaaaagtattgaagcaaaaaagg
ggtccagggttcaagtacgcctccaacctccctggctctctgctgagggaacagaagcct
gtgaaggaggagggagatgcttcttctgcagccaagaggaggccggacagagaggagaca
cccaggtacagaccagaagagcctctgcaccgacagccgccactgctctccccctgcaac
ctgccccggcccaggcctgaggacaaactgaggaagaagaggaagctgtttgatgatgat
gatgatgatgatcttggtgtgagaaagaaggaacggtccgatgatccttatttttctaag
cttctgcaccaaatcaaaacagaggaggatgacgaagacgcatacgaggagcataatgaa
gaaggaagggagcatcacttccggagtgctctagagaggagagggcgttttggagacgct
gaagaagacggggaagacaaggactccaagaacgaacttttgaatcccttcattaaaact
ccgattggtgacagtgatcagtctctctgcagctctccacaggccggccccagcagcgag
ggtggaagtgagactcaagaaaaagggcctcgtccaaaagctcgccgtaagcggcgttta
cctaatagagagctgagccgagagctgagcaaagcactgaaccaggaaatccagaagaca
gacgacagcccggccaacgagaaccgccaaccgctcaaagtggagccagaaacagaaaac
gaggaaccgaagagattgttccgcaacggcactgaactcggggaccagaggacccacctc
aagaccaaagagatgaacgggaccccctgggagctgcgccacttctacccgagtcagatc
actccactgggcttcaacaggagcactccaaccaaccggccggtgcccccacactcccca
cccaagtgtgtccaaatggagcggcacgtcatccgtccccctccgataagcccacctcct
gacagacttcctctgaaagacggtaaaacacacgtcatacagcgcgaggtctggatgaag
gtctttggctatctcacacaccaggagctgtgtgtctgcatgagagtatgcaagacgtgg
aacagatggtgttgtgacaagagactctggaccaagattgatctgaaccgctgcacctcc
atcaccccactcatgctcagtggggttgtccgccgacagccagtttccctggacctcagc
tggaccaacatttccaagaagcaattaagctggcttattaacagattgccgggtctgcga
gtattaaagttatctgggtgttcttgggctgctgtatctgcgctctgcacctccagctgc
cctctgctgcgcacactggatgtccagtgggtggagggactcaaagacgcacagatgaga
gaccttctctctcctcctacagacaacagaccaggtcaactggataaccgttgcaagttg
cgaaacgtagaggacctgcgactggcagggctcgacatcactgacacgtctttacgcctc
atcagtcggcagatgcctctgctgtccaatctggacctgagctactgcaaccatatcaac
gaccagtcagtcaacctgctgacagcagcagggaccacaaccagggactcactcacagaa
atcaacctgtcagtttgtaaccgggtcacagaccattccctaaactttttcaagcgctgt
ggaagcatctgtcagatcgaccttcgcttctgtaagcaggtgacgaagacggcctgcgag
cggttcatcgcagagatgtctgtgagcgtaccattcagactgaaagaggaaaaactgctt
gagaagtcaagctag
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