Acanthopagrus latus (yellowfin seabream): 119021813
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Entry
119021813 CDS
T08233
Symbol
lsm3
Name
(RefSeq) snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat03018
RNA degradation
alat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119021813 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
119021813 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alat03019
]
119021813 (lsm3)
03041 Spliceosome [BR:
alat03041
]
119021813 (lsm3)
Messenger RNA biogenesis [BR:
alat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119021813 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
119021813 (lsm3)
Spliceosome [BR:
alat03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119021813 (lsm3)
Complex C
U2 snRNP components
119021813 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
119021813
NCBI-ProteinID:
XP_036958224
LinkDB
All DBs
Position
6:3704885..3708486
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AA seq
125 aa
AA seq
DB search
MVVFADLATPPVPVAPHCADSEPMADEVEQQPTTNTVEEPLDLIRLSLDERIYVKMRNDR
ELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVAP
PLRVG
NT seq
378 nt
NT seq
+upstream
nt +downstream
nt
atggtggtttttgcggacctggcaaccccccccgtgccggtcgcaccgcactgcgcagac
tcagaaccaatggcggacgaagttgaacagcaaccgaccaccaacacggttgaggagccg
ctcgatctgatcagactcagtctagatgagaggatctacgtcaagatgaggaacgaccgg
gagcttcggggtcgactgcatgcgtacgatcagcacctcaacatgatcctgggtgacgtg
gaggagacggtgacgacggtggagatcgacgaggagacgtacgaagaactctacaagtcg
accaagcggaacatccccatgttgtttgtcagaggagacggcgtcgtcctcgtagctccg
cctctcagggtgggctaa
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