Acanthopagrus latus (yellowfin seabream): 119034077
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Entry
119034077 CDS
T08233
Symbol
pcdh15a
Name
(RefSeq) protocadherin-15a isoform X1
KO
K16500
protocadherin-15
Organism
alat
Acanthopagrus latus (yellowfin seabream)
Pathway
alat04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
alat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
119034077 (pcdh15a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
alat03037
]
119034077 (pcdh15a)
04515 Cell adhesion molecules [BR:
alat04515
]
119034077 (pcdh15a)
Cilium and associated proteins [BR:
alat03037
]
Primary cilia and associated proteins
USH complex and associated proteins
119034077 (pcdh15a)
Cell adhesion molecules [BR:
alat04515
]
Cadherins
Protocadherins
119034077 (pcdh15a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_CELSR2_9th
Ig_Cad99C_N
Cadherin_2
CDH23_a-b
Fibulin_C
Ig_BT4661_1st
GHMP_kinases_N
Motif
Other DBs
NCBI-GeneID:
119034077
NCBI-ProteinID:
XP_036980680
LinkDB
All DBs
Position
15
Genome browser
AA seq
1737 aa
AA seq
DB search
MRRGWWLVRWMGTGMAILSLLTHSWGQDTEDWQYEECKLSRPGPPATIVTIDEESPNGTV
LVENMQINGRAQDPGRTISLTLLDNYDYWVILEPTRQRLYLNSTGRVLDRDPPNYITTIV
VQVQCTNELVGTVILHEVRIVVRDRNDNTPRFQQPRYYVAVNELTPVGTTIFTGFSGNNG
ATDIDDGPNGHIEYSILYNPNDPQSNRTASVANTLSGHIILAERLNYEERTRYLVLVQAN
DRAPYPPNRRTATTTLTVDVLDGDDLGPMFLPCVLVNNTRDCNPITYRVAIPEFTEPRKL
NPLNVTPPVRAVDMDRNIQPPSDRPGILYYILVGHPATYPEYFSLNRTTAELRVLQPISR
DLYQRFTLIIKAEQDNGHPLPAYADLVIEILDENNQAPYFQFATYQGYVSESSPVGTTIS
ANANLTAPLGIIALDNDIEETKDPMVKITQDDYTTIFALTPTGLIRYLRLLKPVDREEKM
TYMFTMVASDGVQQSSPVTVNILVIDANDNTPTFAEVSYSVEVFTDMQPGETVLQLTAPD
ADEGLNGLVTYAILAGAQGDFIISNRTGRITVAPGVTLTVGRSYALTVRASDNAPESQRR
SSITTVYIEVLPPNNQSPPRFPLFTYSLEVSEAMRIGAILLNLQATDRENDPITYRIVSG
DSQQIFNLSETIGLLLLGKPLDRETTDQYRLIVTASDGNPGGTSTTTVNIVVTDVNDNDP
EFDFATPTNFTVQEEKANLFVGQVTATDPDAGVNGQVRYRIVNHPDLFIISANGSIYTRV
PLDRELRNQYDLVVEASDGAVDPRRTMLTLSVRVTDIDDNSPVFSQETYSVNVPENSPVG
TLVLKLSAVDSDLFSNVTYRIKTESARQLFSLNPLTGELAMLQTLDFEDLAAMGMGASYT
FQVEAVDQGGIMPPGQATVTVRITDMNDFSPVFTQDLYKGMVAPNAEKGTVITAVFAEDQ
DPPGTPASFVRYRVDLDRSPYSGSIFDVEEETGRVITKVNLNEEPSVTFKLYLIAYDDGE
PVKTNSTLVEITVLQPSRIPIFTQEEYRFPPVSELAPVGTSVGTILAAAVNQTIFYSIVA
GNERGHFQVNNRTGVISTAKPLDYENVTTYVLRVQADSMVVVMSNLRVPSKTNTAKVYID
VQDENDHPPIFSRMLYIGGVTEDTKIFSSVLKIVATDKDTGNYSKMAYRLIIPPTPEGQD
SFVIETYTGIIKSAIMFRNMRRSYFTFQVIATDNYGKGLSSSAAVVVSVVNALDMQVVVS
TVPPTLVEEKKEELINILERHVQDQIPGAKVIVESIGPRRHGDGYELEDYSKSDLMVYAI
DPLTNRAISPKELFKFLDGNVLEINKEFQPHLGEGGRILEIRSPDVVASVKKAAQAVGYT
EGALLALAIIIILCCIPAILIVMVTYKQFKERQAECAKTARIQMALPPGGKAPPAGAPTA
NLYEELGDSSIRRGGYGRQQQQLLRPSLLRPEELSMESGIDPGQDYYAQDYYNYDQGYDI
PQYGSRRRLITPMYDEYGEVIMEDDGYYYSPHGPEPGKMKRIKLVVDRENESSSTGEECT
TETQQRNRLPNNHSNINGNIYLAQNGTIIRTRRPPLPNNLKVGSPCRLAKHFKKLDKLGV
THEEPPPIISIEGTGNNTENGTGTCVSSNVDVNLNTRSSLGPAIADLRSFGPKTNIAKAL
IDRNSSVPCVNEEQETSVDNHRDSRETLESHSDNTLSDEEELWMGPWNSLHIPMTKL
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgggggtggtggctcgtcagatggatggggacaggaatggcaatcctctctttg
ctaacccacagctggggccaggacacagaagactggcagtatgaggagtgtaagctgtcc
agaccaggcccccctgcaaccatagtgaccatcgatgaggagagccccaatggtacagtt
ttggtggaaaacatgcagataaatggccgtgcccaagacccaggcaggaccatctcactg
accctgctggacaactatgattactgggtgatactggaaccaacaaggcagaggctctac
ctcaacagcaccggacgagttctggacagagatcccccaaattacatcaccaccattgtg
gtgcaggtccagtgcaccaatgagctggttggtactgtcattttgcacgaggtacgaatt
gttgtgagggacaggaatgacaacacccctcgctttcagcagccacgctactatgttgca
gtaaacgagctcacaccagtcggaacgactatttttaccggcttctcaggaaataatggt
gccacggacattgacgacgggcccaatggacacatagaatacagcatcctttacaacccc
aatgatccgcaatctaacagaacagcgagtgttgcaaacaccctttcgggacacattatt
ctggcggagaggctgaactatgaggagagaacacgctatctggttttggtgcaagccaat
gaccgcgctccgtatcccccaaacagacggactgctaccacgactctaacagtcgacgtt
ctggatggagacgacctgggtcccatgttcctgccttgtgttttggtgaataacacccgc
gactgcaaccccatcacctaccgcgttgccatccctgaattcactgaaccgaggaaactg
aacccactcaatgtgaccccacctgtccgggcagtagacatggacagaaacatacagccc
ccatcagacagacctggcattttgtactacatcctggttggtcatccagcaacatatcca
gagtacttctccctgaacagaaccactgcagagctgcgagttctgcagcctatcagcagg
gacttgtatcagaggttcacgctcatcatcaaggctgagcaggacaatggtcaccccctc
ccagcctatgctgaccttgttatcgagatcctggacgagaacaaccaggcaccgtatttc
cagtttgcaacctatcagggctacgtgagcgagtcctccccagtgggtacgaccatctca
gccaatgccaaccttactgccccgctgggaatcatcgcactggataatgacattgaggag
acgaaagatcccatggtaaagattacccaggatgactacaccacaatcttcgccctgacc
ccaactggtttaatccgctacctgaggctcctcaaacctgtggaccgggaggagaagatg
acctatatgtttacgatggtggcatcggatggcgtccagcagagcagccctgtaactgtc
aacatcctggtcatcgatgccaatgacaacacacccacatttgccgaggtctcctacagt
gtcgaagtcttcacagacatgcagcccggggagactgtactacagttaacagcaccagat
gctgacgagggactgaatggtctggtgacctatgcgatactggctggtgcccagggagac
ttcatcatcagtaatcgcactggacgcatcaccgtggcgcccggtgtcactttaactgtg
ggacgatcttacgcactgactgtcagggcttctgacaatgccccagagagccaaagaagg
agctccatcaccacagtgtacattgaggttttgccgcccaacaatcagagcccaccacgc
ttccctctcttcacctacagcctggaagtgagcgaggctatgaggataggagctattctg
ctcaatctgcaggccacagacagagagaatgacccgatcacataccgcatcgtgagtggg
gattcccagcagatcttcaacctctctgaaacgattggcctcctcctgcttggaaagcct
ctggacagagagaccaccgaccagtaccgtctgattgtcacagcgtctgacggcaaccct
ggagggacatccactaccactgtgaacattgtcgtcactgatgtcaacgataacgaccca
gagttcgacttcgccacacccactaatttcactgtccaagaagaaaaggccaacttgttt
gtaggacaagtcacggccacagatcccgatgcaggagtgaacggccaggtccgctaccgg
attgtaaatcatcctgacttgtttataatcagtgctaatggcagcatctatacaagagtg
cctcttgaccgtgagctaaggaaccagtatgacctggtggtagaggcatcagatggggca
gtggatccacggcggaccatgctgaccctctcagtacgggtgacggatattgatgacaac
agcccagtcttctcccaggaaacgtactcggtgaatgtacctgaaaacagccctgtggga
actttggtcctaaaactaagcgcagtggactcagatctcttttccaatgtcacgtatcgg
atcaagactgaatcggccagacagctgttttctctgaaccctctcaccggggagttggct
atgctgcagactctggactttgaggacctggcagctatgggcatgggggcctcttacact
ttccaggtggaagccgtcgaccaaggaggcatcatgcccccagggcaagctaccgtcaca
gtccgcatcacggacatgaatgacttctcccctgtgtttacccaagacctgtataagggc
atggtggcacccaatgcagagaaaggaactgtcatcacagctgtttttgctgaggaccaa
gaccctccaggtaccccagccagttttgtccgttaccgagtggacctggacaggtcaccg
tacagtgggagtatctttgatgttgaggaggaaaccggaagagtcatcactaaggtcaac
cttaatgaagagcccagtgtcacctttaagttgtatctgatagcctatgatgatggggag
ccagtgaaaactaacagcactttggtggagatcactgtcctccagccttcgcgtatacca
atcttcacccaggaggagtacaggtttcctccagttagtgagctggctccagttggtaca
tcagtggggacgattctcgctgctgctgtcaatcaaaccatcttctactccattgtggca
ggaaatgaacgagggcattttcaggtaaacaacaggacgggcgtaatctccacagctaaa
cctctggattatgaaaatgtgaccacctacgtcctgcgggttcaggcagattcgatggtg
gttgtcatgtccaacctgcgtgtgccttctaaaactaacacggccaaggtgtacatcgat
gttcaggatgagaatgaccaccctcctatcttctccaggatgctctacataggtggcgtg
acggaggacaccaagatcttcagctctgtgctcaagatagtggcaactgataaggacact
gggaattacagtaagatggcataccggctgattataccacccacaccagagggccaggac
agctttgtcatcgagacctacacgggaatcatcaagtcggccatcatgtttcgaaacatg
cgcaggtcctacttcacgtttcaagttattgccacagacaactatggtaaaggtctcagc
agcagtgccgcagtggtggtttctgtggtcaatgcgttggatatgcaggtcgttgtgtcc
actgtcccacccacattagtagaagagaagaaggaggaactcattaatattctggagcgc
cacgtccaagaccaaattccaggtgccaaggtgatagtcgagtccattgggccacgtcgt
catggcgatggctatgaactagaggactacagtaagtcggacctgatggtgtacgccatt
gacccgctcacgaacagggcgatttcgccgaaggagctcttcaaatttctcgacgggaat
gtgctggaaatcaacaaggagtttcagccacacctgggcgagggtggccgcatcctggag
atccggtctcctgatgtggtggccagcgtgaagaaggcggcccaggctgtgggctacaca
gagggagctctcctggccctggccatcatcatcatcctctgctgcatccctgcgatcctc
atcgtcatggtcacctacaaacagttcaaagagcgacaggcagagtgtgccaaaaccgcc
aggattcagatggctttaccaccaggagggaaagcacctccagcgggtgcccccactgcc
aacctgtacgaagagctgggcgacagcagcatcaggcgaggaggctacggcagacagcaa
cagcaactgctgaggccatctctgctgagaccagaggaactctccatggagtcaggaatc
gacccgggccaggactactacgcacaagactactataattacgaccaagggtatgacatt
cctcagtacggcagtcggaggaggctgataactcccatgtatgatgaatatggagaggtg
ataatggaggatgatgggtattactatagtcctcatggccctgagcctggcaaaatgaag
cggattaagctggtggtggatcgggagaatgagagcagctcaacaggagaggaatgcacc
acagagacccagcagcgcaacagattacccaacaaccacagcaacatcaacgggaacatc
tacctcgcacagaacggcactatcatccgaactagacggccacctctcccgaacaacttg
aaagtgggctctccgtgtcggctcgctaagcattttaaaaaactagacaagttaggtgtc
actcatgaagaaccccctcctattattagcattgagggcacgggaaacaacacagaaaac
ggaacagggacatgtgtttcctctaatgtagacgtcaacctgaatactcggtcgtccctg
ggacccgccatcgcagatctcagaagttttgggcctaaaaccaatattgccaaggccttg
attgacagaaacagcagtgtcccgtgtgtcaatgaggagcaagagacttctgttgacaac
cacagggacagtagggagacgctggagtcccacagtgacaacacattatcagatgaagag
gagttatggatggggccctggaacagcctgcacataccaatgactaaactctga
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integrated database retrieval system
