Aulosira laxa: NIES50_43810
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Entry
NIES50_43810 CDS
T09879
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alax
Aulosira laxa
Pathway
alax03030
DNA replication
alax03410
Base excision repair
alax03420
Nucleotide excision repair
alax03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIES50_43810
03410 Base excision repair
NIES50_43810
03420 Nucleotide excision repair
NIES50_43810
03430 Mismatch repair
NIES50_43810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alax03032
]
NIES50_43810
03400 DNA repair and recombination proteins [BR:
alax03400
]
NIES50_43810
Enzymes [BR:
alax01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIES50_43810
DNA replication proteins [BR:
alax03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIES50_43810
DNA repair and recombination proteins [BR:
alax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIES50_43810
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIES50_43810
MMR (mismatch excision repair)
DNA ligase
NIES50_43810
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIES50_43810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BAZ75790
LinkDB
All DBs
Position
5454287..5456323
Genome browser
AA seq
678 aa
AA seq
DB search
MIQSQPETKRVEELRRLLQQASYAYYVLDAPIMEDAVYDQLYRELQQIETQYPELITPDS
PTQRVGERPATQFTSVRHNIPLYSLENAFNIDELQSWDQRWRRQAPKITAAEYVSELKID
GSAIALTYQNGILSRGATRGDGVMGEDITQNVRTIRSIPLRLNFDGLEILEKVEVRGEAF
LPLDVFKQINEERQKAGEQLFANPRNAAAGTLRQLDSKIVARRRLDFFAYTLHIPGRDDA
SIANTQWEALELLQKMGFRVNPNHKLCPSLAEVAEYYNYWDTERLNLPYMTDGVVVKLNS
FKLQEQLGFTQKFPRWAVALKYAAEEAPTRVENIAVNVGRTGALTPLAEMRPVQLAGTTV
SRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVLTELRPPNTEPFIMPTNCPVCGQ
QVVRELGEAVTRCVNASCAAILKGAIEHWVSRDALDIKGMGEKLVHQLVDKGLVHSVADL
YDLTEEKLYALERMGQKSAQKLIDAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKFSD
VEKITQARQSDIAGIYGIGVEIAESVHQWFQIDANQTLISRLQAAGLQLANSAETPTITD
SNPNIAGKTFVVTGTLPTLKRDEAKALIQKAGGKITDSVSKKTDYLVVGEDAGSKLAKAE
ALGITQLTEAQLLQMLES
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgatacagagtcagccagaaaccaagcgtgtagaagaactacgccgattgttgcagcaa
gctagttatgcttattacgtattagatgcacccattatggaggatgcagtctatgaccag
ctatatcgggaattgcaacagatagaaacccagtatccagaattaattacaccagatagt
cctactcagcgcgtgggtgagagacctgcaacacagtttacttcggtgcggcacaatatt
ccgctgtacagtctggagaatgcttttaatattgatgagttgcaatcatgggatcagcgc
tggcggcgacaagcaccaaaaattacagccgcagaatatgtctcggaactgaaaattgat
ggttctgcgatcgcacttacctatcaaaatggtatcctctccagaggcgcaactcggggt
gatggggtgatgggggaagatatcacccagaatgtgcgaacaattcgctcaattcccttg
cgcttaaattttgatggcttggaaattttagaaaaggtagaagttaggggtgaggcgttt
ttacccttggatgtatttaaacaaattaacgaagaacggcaaaaagccggcgaacagtta
tttgctaatccccgcaatgccgcagctggtacactcagacaattagactcaaaaattgtt
gctcgcaggcgcttagatttctttgcttacaccctacatattcctggcagagatgatgct
agtattgccaatactcaatgggaagctttggaattgttacaaaagatgggcttccgggtg
aaccccaaccataagctatgcccgtctttagcggaagttgctgaatactataactattgg
gatacagaaaggctcaatttaccctacatgactgatggggtagtcgtaaagctcaattcc
tttaagcttcaggaacagctaggatttacgcaaaagtttcctcgctgggcggtggcgttg
aagtatgcagccgaagaagcacctacccgtgtagaaaatattgcagtgaatgttggcaga
acaggcgctttaaccccattagcagaaatgcgccccgtacaattagcagggacaacagtt
tcccgcgctaccttacataatagcgatcgcatcgcccaattagacatccgcatcggtgat
actgtaattgttcgcaaagctggggaaattattccagaggtggtacgagtactcacagaa
ctccgtcctccaaacaccgaaccctttatcatgccaaccaattgcccagtttgcggtcag
caagtagtgcgggagttgggtgaagccgtgactaggtgtgtcaatgcttcctgcgccgct
atcctcaaaggtgcaatagaacattgggttagccgcgatgccttagatattaaaggtatg
ggtgaaaaactggtacatcaactcgtagataaaggtttggtgcattccgtagccgattta
tatgacttgacagaagaaaaattatatgcactagaaaggatggggcaaaaatcagcgcag
aaattaattgatgcgatcgcccaatcaaaaaatcaaccttggtcaagagtattgtatggt
ttaggcatccgtcatgttggcagtgtcaatgctcaactattaaccgaaaaattttctgat
gttgagaagataactcaagccagacagtcagatattgctggaatttatggtattggtgta
gaaattgcggaatcagtacatcaatggtttcagattgatgctaatcaaactttaatatct
cgcctccaagcagctgggttgcaattagcaaattccgcagaaacaccaacaattactgat
agtaatcccaacattgcaggcaaaacctttgtagttacagggactttaccgactttaaaa
agagatgaagcaaaagctttaattcaaaaagctggcggtaaaattacagattccgtcagt
aagaaaacagattatttagtagtgggagaagatgctggttctaagttagctaaagccgaa
gctttaggtattacgcagttaactgaagctcagttattgcagatgttagagagttaa
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