Acinetobacter lactucae: OTEC02_14935
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Entry
OTEC02_14935 CDS
T05220
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alc
Acinetobacter lactucae
Pathway
alc03030
DNA replication
alc03410
Base excision repair
alc03420
Nucleotide excision repair
alc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OTEC02_14935 (ligA)
03410 Base excision repair
OTEC02_14935 (ligA)
03420 Nucleotide excision repair
OTEC02_14935 (ligA)
03430 Mismatch repair
OTEC02_14935 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alc03032
]
OTEC02_14935 (ligA)
03400 DNA repair and recombination proteins [BR:
alc03400
]
OTEC02_14935 (ligA)
Enzymes [BR:
alc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OTEC02_14935 (ligA)
DNA replication proteins [BR:
alc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OTEC02_14935 (ligA)
DNA repair and recombination proteins [BR:
alc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OTEC02_14935 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OTEC02_14935 (ligA)
MMR (mismatch excision repair)
DNA ligase
OTEC02_14935 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OTEC02_14935 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
FmiP_Thoc5
5_3_exonuc
zf-C2H2_ZFAND2
DUF724
ZapB
Motif
Other DBs
NCBI-ProteinID:
ARD29953
LinkDB
All DBs
Position
complement(3139179..3141218)
Genome browser
AA seq
679 aa
AA seq
DB search
MATTSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPDLVQSDSP
TTKVGGQALSKFQSVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSDHFEIPRLLEVRGEVLMP
KSGFEKLNADQEAKGDKTFANPRNAAAGSLRQLDPNIAAGRPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTKLGFEIAERQYLCNSIQEVQQRYEQIQQERSNLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVDQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRVGDTVSVYRTGDVIPKVEKVWPEFRPVDAEVVHLPESCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKALDIEGLGDRWVESLLHLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLMDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAADVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIVV
MNETDFLSLMASYGQTLSE
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaacttccgtgatcgaacagatgcgtcagcttattcaactgattgcaaagcat
aaccatgcctattatgtcatggatcagccgacaatctcggacagtgaatatgatcatttg
tttcaccagttaaaagctttagaagagcaatatcctgaccttgttcaatcagattcacca
acaacaaaagtaggtggacaagcactctctaaattccaaagtgtgacccatgtagttccg
atgctttctttggggaatgtttttaatcaggaagacttgtttgcatttgcgcgtcgtgtt
gaagagcgtttgcctaatcaaaaagtacaatatgaagtcgaattaaaacttgatggcctt
gcgatttcactctggtatgaaaatggtgtcttagtacgtggcgttacacgtggtgatggt
gaaactggagaagacattacccagaacgttaaaacgattcgtaatttgccaaaagtgttg
cattcagatcactttgaaattccacgtttgttagaagtacgcggcgaagtacttatgcca
aagtctggctttgaaaaactcaatgccgaccaagaagcaaaaggcgataaaacatttgcg
aacccgcgtaatgcagcagcgggtagtttaagacaactcgatcctaatattgctgctggt
agacctttagcattttatgcttatggtatcgctcagtgtgaacctaaccatggcttaacc
accatgcatgacagtctacaatggctcacaaaacttggatttgaaattgcggaacgtcaa
tatctgtgtaattcaattcaagaagtacagcaacgttatgagcaaattcagcaagaacgt
tcaaatttacaagttgaaattgatgggatggtcgtaaaggttgatgacttaaagcaacaa
caacaacttggttttttaagtcgtgaaccacgttgggcaactgcttataaattccctgca
caagctgcattaactacggtcgatcaaattgattggcaagtagggcgtacaggtactttg
acccctgtagcacgtttaaaccctgtatttgtgggtggtgtgacggtttctaatgtaacc
ttacacaacattggtgaaatccatcgtcttgatgtacgtgttggcgatacggtgagtgtt
tatcgtaccggcgatgttattcctaaagtagaaaaagtctggccggaattccgtcctgtt
gatgccgaagttgtacatttacctgaaagctgtcctgtttgtgcttcaccagttgtaatg
cctgaaggggaagctttagctcgttgttctggtggactgtattgtgctgcacagcgtatt
gaagcgattcgtcattttgtatcacgtaaagctctggatatcgaaggtttaggagatcgc
tgggtagagtctttattacacctcgatttacttaaagatgttgccgatatctaccatttg
cacgaacaccgagaaactttacttggtattgaaaaaatgggcgagaaatcggtacaaaat
ctgatggatgccattgaagccagcaaaaagacaacgcttgcacgttttatttatgcttta
ggaattcgaggagtaggtgaaacaacagctagaatgttagccaatactttccaaactttg
gaagcacttaaagctgctgatgttgaagctttaaagaaaactccagatgttggtgatatt
actgcagagtggattgctgactttttcttggcgccacacaacattgaagtgcttgatcgc
ttaattgcagcagggattcattgggatgcaccaacagcaccaacacgccaaccgttaaat
ggtgaaagctgggtgttaacaggtacattagagcaaatgacccgtgatcaggcgactcaa
atgctacaagcattaggtgcacgtgtaagtggtagcgtatcgagtaaaaccaaatgtgtt
gttgcgggtgagaaagcgggttctaaattagaaaaagcagcaaaacttggtattgtagtt
atgaatgagactgatttcttatcccttatggcgagctatgggcagactttaagcgaatag
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integrated database retrieval system
