Alcaligenes sp. NLF5-7: MID00_14125
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Entry
MID00_14125 CDS
T10407
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alcn Alcaligenes sp. NLF5-7
Pathway
alcn03030
DNA replication
alcn03410
Base excision repair
alcn03420
Nucleotide excision repair
alcn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MID00_14125 (ligA)
03410 Base excision repair
MID00_14125 (ligA)
03420 Nucleotide excision repair
MID00_14125 (ligA)
03430 Mismatch repair
MID00_14125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alcn03032
]
MID00_14125 (ligA)
03400 DNA repair and recombination proteins [BR:
alcn03400
]
MID00_14125 (ligA)
Enzymes [BR:
alcn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MID00_14125 (ligA)
DNA replication proteins [BR:
alcn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MID00_14125 (ligA)
DNA repair and recombination proteins [BR:
alcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MID00_14125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MID00_14125 (ligA)
MMR (mismatch excision repair)
DNA ligase
MID00_14125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MID00_14125 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UTM00628
LinkDB
All DBs
Position
3072457..3074544
Genome browser
AA seq
695 aa
AA seq
DB search
MSLKRVQQLHEELAQHNWAYYVQDAPSISDAQYDALMNELLALEAEHPEWITPDSPTQRV
GAAPLDGFDTVQHAVPMLSLGNAFDAEEVQAFDKRVADTLVEAGVVGLDRRVDYLAEYKF
DGLAISLRYEQGLLVQASTRGDGTTGEDVTSNIRTIKSIPLRLRGDAAQLPAVLEVRGEV
LMNRADFERLNENQTKRGEKVFVNPRNAAAGSLRQLDPKITAKRPLRFFAYGWGEVSPMP
AANQPQSALFAEPAGEALPRDTQSGMMDWLESLGMPLSRDRKVVKGVQGLLGFYGETQQR
RPDLPFEIDGVVYKVNSLAAQRVLGYVARAPRFAVAHKFPAQEEMTRVESIEFQVGRTGV
VTPVARLKPVFVGGVTVTNATLHNEDEVRRKDVRAGDTVVVRRAGDVIPEVVAVVLEQRP
ESSVPFEMVKECPACQSALERLEGESAWRCTGGLICPAQRKQTLIHAASRKALDIEGLGE
KLVDQLVETGLVHTLADIFKLQVEKLVLLERMGRKSAENLIEAIDKVREPALNRLIYALG
IRHVGETTARDLAQHFGSLQALEQADEEALLQVNEVGPVVAASVRHFFQEPHNREALDAL
LAAGVTPQQGQARANSANLPLAGKTVVITGTLPSMSRDEATRRVLEAGGKASGSVSKKTA
YVLAGAEAGSKLTKAQELGVTILDEAQFLALLAGE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgagcttgaagcgagtacagcagttacatgaagaactggcccagcataactgggcctat
tacgttcaggatgcgcccagcatttcggacgcgcaatacgacgcattgatgaacgagctg
ctggcgctggaagccgagcacccggaatggattactccggactcgcccacacagcgtgtg
ggtgcagcgccactggacggttttgatacggttcagcacgctgtccccatgctgtccttg
ggtaatgcctttgatgctgaagaagttcaggcctttgacaagcgtgtcgccgataccctg
gtcgaggcaggtgtggtgggactggaccgtcgggtagattatctggccgaatacaagttt
gacggcctggcgatcagcttgcgctatgagcaaggtctgttggtacaggcatcgactcgc
ggtgatggcaccacgggcgaggacgtcaccagcaatattcgcaccatcaagtccattcct
ctgcgcttgcgtggcgatgcggcacaattgcccgccgtgctggaggtgcgaggcgaggtt
ctgatgaaccgggcggactttgagcgcctgaacgagaaccagaccaagcgtggcgagaaa
gtatttgtgaatccgcgcaatgcggccgcaggcagcttgcgtcagctggacccgaaaata
actgccaaacggcctttgcgcttttttgcctatggttggggtgaggtcagccccatgcct
gccgcgaatcagccacaaagtgccttgtttgctgaacccgctggcgaggcactgccccgt
gatacccaatcgggcatgatggactggctggaaagcctgggtatgcccttgagccgcgac
cgtaaagtcgtgaagggcgtgcagggcttgctgggtttctatggtgaaacccagcaacgt
cgccccgatttgccctttgaaattgacggtgtggtttataaggtcaactctttggctgcg
cagcgtgttctgggctatgtggcccgtgcgccgcgctttgccgttgctcataaattcccc
gcgcaagaagaaatgacgcgtgtggagagtatcgagtttcaagtaggccgtaccggggtt
gtcacacctgtcgcacgtttgaagccggtgtttgtgggcggtgtcacagtcactaatgcc
acgctgcataacgaagacgaagtgcgtcgcaaagatgtgcgagcgggcgataccgtcgtg
gtacgccgtgctggtgatgtgatccctgaagtggttgctgtggtgttggagcagcgtccc
gagagcagcgtgcctttcgagatggtcaaggagtgtcccgcttgtcagtcggcactggag
cgtctggaaggagagtctgcctggcgttgtactggtggtctgatttgtcctgcccagcgc
aagcaaaccctgattcacgccgccagccgtaaagcgctggatattgaaggcttgggtgaa
aagctggtggatcagttggtggaaaccgggctggtgcataccttggccgatatcttcaag
ctgcaagtcgaaaagttggtgctactggagcgtatgggacgcaagtcggccgagaatctg
atcgaggcgattgataaagtgcgcgaaccggccttgaatcgtctgatttacgccttgggc
atccgccatgtgggtgagaccacggcgcgcgatctggcacagcattttggctccttgcag
gcattggagcaggctgatgaagaagcgctgctgcaggtcaatgaggtgggcccggttgta
gcggcttccgtacggcactttttccaggagccgcataatcgtgaggccctggatgcgctg
ctggcggctggggtcacacctcaacaggggcaagcccgcgccaatagcgctaatctgccg
ctggcgggcaaaacggtggtcattacgggtacgctacccagcatgagccgggacgaagct
acacgccgtgtattggaagcagggggcaaggccagtggctcggtctccaaaaagaccgcc
tatgtgctggcaggtgcagaggcgggttccaagctgaccaaggcgcaggagttgggcgtg
actattctggacgaagcccagttcctggctttactggcgggtgaatag
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