Alistipes sp. dk3624: GFH31_01840
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Entry
GFH31_01840 CDS
T06260
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ald
Alistipes sp. dk3624
Pathway
ald03030
DNA replication
ald03410
Base excision repair
ald03420
Nucleotide excision repair
ald03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ald00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GFH31_01840 (ligA)
03410 Base excision repair
GFH31_01840 (ligA)
03420 Nucleotide excision repair
GFH31_01840 (ligA)
03430 Mismatch repair
GFH31_01840 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ald03032
]
GFH31_01840 (ligA)
03400 DNA repair and recombination proteins [BR:
ald03400
]
GFH31_01840 (ligA)
Enzymes [BR:
ald01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GFH31_01840 (ligA)
DNA replication proteins [BR:
ald03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GFH31_01840 (ligA)
DNA repair and recombination proteins [BR:
ald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GFH31_01840 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GFH31_01840 (ligA)
MMR (mismatch excision repair)
DNA ligase
GFH31_01840 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GFH31_01840 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
5_3_exonuc
Auto_anti-p27
KorB
Motif
Other DBs
NCBI-ProteinID:
QGA22686
LinkDB
All DBs
Position
complement(417036..419135)
Genome browser
AA seq
699 aa
AA seq
DB search
MMRQKIEQLREQINDHNYRYYVLNDPLIGDYEFDALLRELQELEKAYPEFDDPNSPTHRV
GSDATNEFRTVEHRYPMLSLSNTYSLDELHEFDVRIRKEVEPVEYVCELKFDGTAISLTY
QDGRLSQAVTRGDGTRGDDVTANVRTIRTVPLRLAGDDYPSFFEIRGEVLMPFRSFERLN
REREDIGETPFANPRNAAAGSLKQQSSAETARRELDCTLYALVGDKLPFETHYESLQAAR
RWGFKVSDQISLCRSIDEIDAFIRHWDKARYDLPFATDGVVIKVNRFADQNRLGYTAKAP
RWAVAYKFKAEQARTRLLSVDFQVGRTGAVTPVANLDPVPLAGTTVKRASLHNAEQIALL
DIRLGDMVYVEKGGEIIPKITGVDLSERPAGSEPFKFITHCPECGTELVKYEGEARHYCP
NPSHCPPQIVGRIVHFISRKAMNIDGLGEETVQLLYDSGLVADIADLYRLKREDLVDLPR
LGEKSADNILNSIRESLNVPFHRVLFAIGIRFVGETTAKTLAAQFKSLDALAAATPEELA
TAEDIGERIAVSVRDYFLDPANLDILERLKASGLHFEAEESARLSDRLDGKKIVISGTFE
RHSRDQLKQLIEAHGGKNLGTVSSTTDYLLAGSNIGPAKLTKANKLGVKIIGEADFERII
AGEAVGEKEHDEIPVAEQSSSEKKEEPSENNSKQRTLFG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
attatgcggcagaaaatcgaacaacttcgcgaacaaatcaatgatcacaattaccggtat
tacgtactgaatgatccgttgatcggcgattacgaattcgacgccctgttacgcgagttg
caggagctcgaaaaagcctacccggagttcgacgatcccaattcgccgacgcatcgcgtc
ggcagcgatgcgaccaatgagtttcgcaccgtggaacaccgttatccgatgttgtcgctg
tcgaatacctattcgctcgacgagctgcacgaattcgatgttcgcatccgcaaggaggtg
gaacctgtggaatacgtatgcgagctgaaattcgacggcacggcgatcagcctgacttat
caggacggtcgcttgtcgcaggccgtgacgcgcggcgacgggacgcgcggcgacgacgtg
acggcgaacgtaaggacgatccgcaccgtgccgctgcggcttgccggggacgattacccg
tcctttttcgaaattcgcggcgaggtgctgatgccgttccgctcgttcgaacgactgaac
cgggagcgggaagacatcggggagacgccgttcgccaatccgcgcaatgccgccgccggg
tcgctcaaacaacagagctcggccgaaaccgcccgccgcgagctcgactgcacgctgtat
gcgctggtcggcgacaagctgccgttcgaaacccattacgaaagtttgcaggcggcccga
cgttggggatttaaggtatccgatcagatcagcctgtgccgttcgatcgacgagatagac
gcttttatccgtcattgggataaggcgcgttacgacctgccgttcgctacggacggcgtg
gtaatcaaagtgaaccgtttcgccgatcagaatcggctcggttataccgccaaggctccg
cgctgggccgtagcctataaattcaaagcggagcaggcccgcacccggctgttgtcggtc
gattttcaggtcgggcgtaccggggcggtgacgccggtcgccaacctcgatccggtgccg
ttggccggtacaaccgtcaaacgggcttcgctgcacaatgccgaacagatcgcgctgctc
gatatccggctcggcgatatggtctatgtggaaaagggcggcgaaattattccgaaaatt
accggcgttgatctgtccgaacgtccggccggcagcgagccgttcaagttcatcacgcac
tgtccggaatgcggaacggaattggtcaaatacgaaggcgaggcgcgccattactgtccg
aacccaagccattgtccgccgcagatcgtcggccgtatcgtgcatttcatttcgcgtaag
gcgatgaatatcgacggtctcggcgaggagacggtgcaactgttgtacgattcggggctg
gtcgccgatatcgccgatctgtaccggctgaaacgcgaggacctggtcgatttgccgcgt
ctgggcgaaaaatccgccgacaatattttaaacagtatccgggagtcgttgaacgttccc
tttcatcgggtattgttcgcgatcgggattcgcttcgtcggcgagacgaccgccaaaacg
ctcgccgcgcagttcaagagcctcgatgcgcttgccgcggctacgcccgaggagctggct
acggcggaggatatcggcgagcggatcgctgtcagcgtgcgggattactttctcgatccg
gcgaacctggatattttggaacggctgaaggcgagcggcctgcatttcgaagccgaggaa
tcggcgcgtctttcggatcgtttagacggtaaaaagatcgtcatttcggggacgttcgaa
agacattcgcgcgatcagttgaaacaactgatcgaggcgcacggcggcaagaacctgggg
accgtttcgtccactaccgattacctgctggccggcagcaacatcggcccggcgaaattg
accaaagccaataagctgggcgtcaaaattatcggcgaggccgatttcgaacggattatt
gccggagaagccgtcggggagaaggaacacgatgaaattcccgttgcggaacaatcgtcg
tccgagaaaaaagaagaaccctcggaaaataattcgaagcagcgcaccttgttcgggtaa
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