Aquirufa lenticrescens: G9X62_10335
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Entry
G9X62_10335 CDS
T08551
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alen
Aquirufa lenticrescens
Pathway
alen03030
DNA replication
alen03410
Base excision repair
alen03420
Nucleotide excision repair
alen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G9X62_10335 (ligA)
03410 Base excision repair
G9X62_10335 (ligA)
03420 Nucleotide excision repair
G9X62_10335 (ligA)
03430 Mismatch repair
G9X62_10335 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alen03032
]
G9X62_10335 (ligA)
03400 DNA repair and recombination proteins [BR:
alen03400
]
G9X62_10335 (ligA)
Enzymes [BR:
alen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G9X62_10335 (ligA)
DNA replication proteins [BR:
alen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G9X62_10335 (ligA)
DNA repair and recombination proteins [BR:
alen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G9X62_10335 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G9X62_10335 (ligA)
MMR (mismatch excision repair)
DNA ligase
G9X62_10335 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G9X62_10335 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
UAJ14952
LinkDB
All DBs
Position
complement(2309981..2311978)
Genome browser
AA seq
665 aa
AA seq
DB search
MDINQRMNELIEKINLYNEAYYQQNESIISDQAFDQLLAELIKLEQENPLFARSDSPTQK
VGGTITKEFKSVTHQFPMLSLGNTYNETDLRDFDERVKKGLEGEKFEYVCELKFDGVALS
FWYTNGVLQKGVTRGDGTRGDDITANVKTIKSLPTRVNSTVLPTTYEIRGEGYMPITSFD
RINAEKIAKGDQPLANPRNAASGTFKMQDSAEVARREMECFIYSYLGNENPFNSHSEALE
HLKSVGFSVSPTYRVCSSINEVLTYIEDWSEKRNDLPLNTDGIVIKVNDFGQQERLGFTA
KSPRWAIAFKYPSEIARTRINSVSYQVGRTGNVTPVANLEPVYLAGTVIKRASIHNANEM
ERLDLREGDTVFIEKGGEIIPKITGVDTSARKEGNAFIFPHHCPSCNTELIRLEGEANHY
CPNDTGCPPQIKGKIEHFIARKALNIENLGTETVDLLFEKGIVQNVADLYDLNAEKFIGL
EGFQSKSIQNILSSVEKSKQIPFRQVLFGLGIRHVGATIAEKLVLHFHSLENLVQANLEE
LIAVPEIGERIALSVLEYFADSENRAIIERLRTAGVQFSEEISEIVLETTALEGKTFVIS
GVFSHFDRDGLKAKIIANGGKVVSSISAKLDYLVAGENMGPAKLEKANSLSIPIISEDEF
IALLS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatataaatcagcggatgaatgaactcattgagaagatcaatctctataatgaggcc
tattatcaacagaatgaaagtattatttcggatcaagcattcgatcaattactcgctgaa
ttaatcaaattagagcaagaaaatccactttttgctcgttcggatagccccactcaaaaa
gtaggcggcaccattaccaaagaattcaaatctgttacccatcaattccccatgttatcc
ttagggaatacttacaatgaaaccgatttacgggattttgatgagcgggttaaaaaaggg
ttagaaggagagaaattcgaatacgtatgtgaattgaaatttgatggggtagccttgtca
ttttggtacacaaacggggttttacaaaaaggggtaacaagaggagatggaacgcgaggg
gatgatattacagcgaatgtaaagaccatcaaaagtttacccacccgcgttaattctacg
gttttacccaccacctatgaaatcagaggcgaaggctatatgcctattacttcctttgat
cgaattaatgcggagaagattgctaaaggagatcaacccttagccaaccctcgcaatgcg
gcttccggaactttcaaaatgcaggattctgctgaagttgctcgaagagagatggaatgc
tttatttattcctatttaggtaatgagaatcctttcaacagccattcggaggcattagaa
catttaaaatcggttggctttagtgtttcacctacgtatcgtgtttgctcttcgatcaat
gaggtattaacgtatatcgaggattggtcagagaaaagaaatgatctacccttaaatacg
gatgggattgtaatcaaagtcaatgattttggacaacaggaaaggttaggttttacggcc
aaatctcctcgctgggcgattgccttcaaatatccgtctgaaattgcccgtacacgcatc
aactctgtttcttatcaagtaggcagaaccggaaatgtgactccagtcgctaatctagag
cccgtttacttagcaggaacggtcatcaaacgtgcctctattcacaatgcgaatgaaatg
gaaagactggatttacgagaaggtgataccgttttcattgaaaaaggaggtgagatcata
ccaaagattacgggtgttgacacttctgccagaaaagaaggaaatgcctttatttttcca
caccactgcccttcatgtaatactgaacttattcgtttagaaggagaagcaaaccactac
tgtcccaacgacaccggttgtccaccacaaattaaaggtaagatcgaacatttcattgcc
agaaaagccttgaacatcgaaaacctaggaacagaaacggtcgatttattattcgaaaaa
ggaattgtccaaaatgtggcagacctctatgatttaaatgcagagaaattcattggatta
gaaggttttcagtctaaatcaattcaaaacatactttccagcgtagaaaaatcgaagcaa
atcccgtttcgacaagttctatttggcctaggtatacgtcacgtgggagcaaccatcgcg
gaaaaattagtccttcattttcactcgttagagaatttagtgcaggctaacctagaagaa
ttaatcgcagtgcctgaaataggggagcggattgctcttagtgttttggaatactttgcg
gattccgaaaatagagcaatcatcgagcgcctgagaacggctggggtgcaattttccgaa
gaaataagtgaaatagttttagaaacaacggccttagaaggtaaaactttcgtaatttcg
ggtgtatttagccattttgatcgagacgggttaaaggcaaaaatcatcgctaacggcgga
aaagtcgtttccagtatttctgccaagttagattacctagtcgccggtgaaaatatggga
ccagcgaaactagaaaaagccaattcattatccataccaattatatcggaggacgagttt
attgcccttctttcttaa
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