Agrobacterium larrymoorei: CFBP5473_05625
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Entry
CFBP5473_05625 CDS
T06268
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alf
Agrobacterium larrymoorei
Pathway
alf03030
DNA replication
alf03410
Base excision repair
alf03420
Nucleotide excision repair
alf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFBP5473_05625 (ligA)
03410 Base excision repair
CFBP5473_05625 (ligA)
03420 Nucleotide excision repair
CFBP5473_05625 (ligA)
03430 Mismatch repair
CFBP5473_05625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alf03032
]
CFBP5473_05625 (ligA)
03400 DNA repair and recombination proteins [BR:
alf03400
]
CFBP5473_05625 (ligA)
Enzymes [BR:
alf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFBP5473_05625 (ligA)
DNA replication proteins [BR:
alf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFBP5473_05625 (ligA)
DNA repair and recombination proteins [BR:
alf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFBP5473_05625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFBP5473_05625 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFBP5473_05625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFBP5473_05625 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RUBY_RBDX
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QCI97447
UniProt:
A0A4D7DNJ2
LinkDB
All DBs
Position
circular:1199618..1201789
Genome browser
AA seq
723 aa
AA seq
DB search
MSKEQTPVEKLSELEASSELAFLAAELARHDALYHGKDQPEISDAEYDALKRRNDAVEAA
FPDLVRADSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSDEDVSDFVASVYRFLGRLPDD
SIAFTAEPKIDGLSMSIRYERGRLKTAATRGDGTTGENVTANILTIKEIPNELPAGVPDV
VEVRGEVYMAKSDFLALNAQMEADGKQTYVNPRNTASGSLRQLDPNVTARRKLKFFAYAL
GEVSNGGQATRLADTQFGIVQKFREWRFPVNPLMKRFTSGAQLLEHYREIGIARPDLDYD
IDGVVYKVDELDLQERLGFRSRSPRWATAHKFPAEQAFTTVEKIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNNGERIRPEDHDIRVGDTVIVQRAGDVIPQVLDVL
LEKRDAHSVRYEFPKKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVS
RNAFDIEGLGTKQIEFFFESEDPALSIKTAPDIFTLKERQEKSLAKLENIDGFGKVSVKK
LFDAIDTRREIDLHRLIFALGIRHVGETTAKLLARTYGTYEHFEEAMKAAGDLSGDAWNE
LNSIEGIGEVVARAIVEFYKEPRNLDVIDRLIRELRPKEAEKPSAEGSPVAGKTVVFTGS
LEKFTRDEAKARAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLAL
IAG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagagcagacacctgtcgaaaaactgtccgaacttgaagcgtcttccgagctt
gcctttcttgcggcagagcttgcgcggcatgatgcgctttaccatggcaaggatcagcca
gaaatttcagatgcggaatatgacgcgctgaagcggcgtaacgatgccgtagaggcggca
tttcccgatctggtgcgggcggatagtccttcgaagaaggtgggcttcacgccgctgccg
acatttgcgcccatcgttcatgcgcggcccatgctttcgctggacaacacgttttcggac
gaggacgtgtctgatttcgtcgcttcggtttaccgattcctcgggcgtctgcctgacgat
tcgattgcctttaccgcagaaccgaagatcgacgggctttccatgtccatccgctatgag
cgtggcaggctgaagacggcggcgacgcgtggggatggcacgacgggcgaaaacgtgacc
gccaatattctgaccatcaaggaaattccgaacgagcttccagccggtgtgcccgatgtg
gtggaagtgcgcggcgaagtctatatggccaagagcgactttctggcgctgaacgcgcag
atggaagccgatggcaagcagacctacgtcaacccgcgcaatacggcatccggttcgctg
cggcagctggacccgaatgtgacggcgcggcgcaagttgaagttcttcgcctatgcgctg
ggcgaggtttccaatggcgggcaggcgacgcgccttgccgatacgcagttcggtattgtt
cagaaattccgcgaatggcgctttcccgtaaaccccttgatgaagcgattcacatccggc
gcgcaactgcttgaacattatcgcgaaatcggcattgcgagaccggatctcgattatgat
atcgatggcgtggtctataaggtggacgagcttgatttgcaggagcgtctcggctttcgt
tcgcgcagcccgcgctgggcaacggcgcataagtttcctgccgagcaggcttttacgacg
gtcgagaagatcgaaattcaggtgggccgaaccggcgcgttgacccccgttgcgcgactg
acgccgatcacggttggcggcgtggtggtgacgaatgcgacgctgcacaatgccgattac
atcgaaggcatcggcaataatggcgagcgcataaggcccgaggaccatgatattcgcgtg
ggcgatacggtcatcgtgcagcgtgcgggtgatgtcattccgcaggttctagatgttctg
ctggaaaagcgtgatgctcattccgtgcgctacgagtttccgaagaaatgcccggtctgt
ggcagccatgcggtgcgcgagcgtaacgagaagacgggcaagctggattcggttacgcgc
tgcaccggcggtttcgtctgccgggcgcaggcggtggagcatctgaagcacttcgtttcg
cgcaacgccttcgacatcgaggggctcggcaccaagcagatcgaattcttcttcgagagc
gaagacccggcgctttccatcaagaccgcgccggatatcttcacgctgaaggagcggcag
gagaaatcgctggcgaagctggaaaatatcgacggcttcggtaaggtcagcgtgaagaag
ctgttcgacgccatcgatacgcgccgagagatcgatctgcaccggctgattttcgcgctc
ggcattcgccacgtgggagaaacgacggcaaagcttctggcgcgcacctacggcacctat
gagcatttcgaagaggcgatgaaggctgcgggcgatctttccggtgatgcctggaacgag
ctgaacagcatcgaaggcatcggtgaagtcgtggcgcgcgcgattgtggagttttacaag
gagccgcgcaacctcgacgtcatagaccgcctgatccgcgagttgcgccccaaagaggcc
gagaagccctcggcggaaggtagcccggtggcgggcaagaccgtggtgttcaccggctcg
ctggaaaagttcacccgggacgaggcgaaggcaagggccgagagccttggcgcgaaagtg
gcgggctccgtttccaagaaaaccgatatcgttgtggccggaccgggtgcgggctccaag
ctggacaaggcgcgggaacttggcgtgcagaccatggatgaggatgagtggctggcgttg
attgcggggtga
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