Algoriphagus sp. NBT04N3: GYM62_16210
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Entry
GYM62_16210 CDS
T09623
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
algo
Algoriphagus sp. NBT04N3
Pathway
algo01501
beta-Lactam resistance
algo01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
algo00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
GYM62_16210
01503 Cationic antimicrobial peptide (CAMP) resistance
GYM62_16210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
algo03036
]
GYM62_16210
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
algo02000
]
GYM62_16210
01504 Antimicrobial resistance genes [BR:
algo01504
]
GYM62_16210
Chromosome and associated proteins [BR:
algo03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
GYM62_16210
Transporters [BR:
algo02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
GYM62_16210
Antimicrobial resistance genes [BR:
algo01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
GYM62_16210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSH_RND
Beta-barrel_RND_2
YknX_C
RND-MFP_C
BSH_CzcB
Beta-barrel_RND
BSH_CusB
Biotin_lipoyl
BSH_YknX
HH_MFP_RND
CzcB_C
LSM12_LSM
HH_EMRA
SHOCT
HH_AAEA_pHBA
Motif
Other DBs
NCBI-ProteinID:
QYH40260
LinkDB
All DBs
Position
complement(3722783..3723865)
Genome browser
AA seq
360 aa
AA seq
DB search
MKKQTKVILILAIIILVVVAFLYPRLDTRNTNENAVTSTGSGRGPAQELPVNVVKLKKES
LRNQLQVTGTILPNEAVDIRPEVSGLVSKISFKEGQYVTKGTPLVYLDDDELQAQYQRLQ
YTQKLFETQENRQKQLLAREAISQEEYDIALNQYNTTLSDLKLVEAQLAKRIIRAPFSGR
IGLRMISEGSVISPSDMIASIVNIDPIKIEFSIPERYSNQVKMGAPIYFSNESSKEEVQG
EVYAYEPQIDAATRTLKLRALSSNKEGKFLPGMYVRIRFVLEVTENALMVPAESIIPELQ
GYKVYVVGPDNKAQEKAVEIGTRTETQVQILSGLEEGDLVLATGVLQARPGMPLKYTQIN
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagcagaccaaggtcattcttattttagccatcataatactggtggttgtcgct
tttctatatccaaggttggacactagaaacaccaatgagaatgctgtgacttccactggt
tcaggacgaggccctgctcaggagcttcctgtcaatgtagtcaaattgaagaaagaaagt
ctcagaaatcaattgcaggtcactggaacgattttgcccaatgaagctgtagatattcga
cctgaagtttccggcctagtcagtaaaatttcattcaaagaaggtcaatatgtgaccaaa
ggaacccctttggtctatctggatgatgatgaattacaggcacaatatcaaaggttacag
tatactcagaagctttttgaaacccaagaaaacaggcaaaaacaattattggcaagagaa
gcaatcagccaggaagaatatgatattgcacttaatcaatacaataccacgctttctgat
ttgaaattggtagaagcccaactggctaaacgaattattcgggctccattcagcggaaga
ataggattgagaatgatttctgaaggaagtgtaattagcccatcagacatgattgcgagt
attgtgaatattgacccaatcaaaattgagttctctattcctgagagatattccaaccaa
gtgaaaatgggagctccaatttatttttccaatgaatcttctaaagaagaagtgcaagga
gaggtttatgcctatgaaccacaaatcgatgcagctacccgaaccctgaagttaagagca
ttgagttctaataaagaagggaagtttcttccggggatgtatgtgagaattcgatttgtt
ttagaagtaaccgaaaatgcattgatggtaccggcagaatctattattcctgaattgcag
ggatataaagtatatgtggtaggccctgataataaagctcaggagaaagcagtagaaatt
ggaaccagaacagaaacccaggttcagatcctaagcggactggaagaaggggacttggtt
ttggccacaggagtcttgcaagcacgccccggcatgcctttgaaatacactcaaatcaat
taa
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