Actinobacillus lignieresii: NCTC10568_01616
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Entry
NCTC10568_01616 CDS
T06678
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alig
Actinobacillus lignieresii
Pathway
alig03030
DNA replication
alig03410
Base excision repair
alig03420
Nucleotide excision repair
alig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC10568_01616 (ligA)
03410 Base excision repair
NCTC10568_01616 (ligA)
03420 Nucleotide excision repair
NCTC10568_01616 (ligA)
03430 Mismatch repair
NCTC10568_01616 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alig03032
]
NCTC10568_01616 (ligA)
03400 DNA repair and recombination proteins [BR:
alig03400
]
NCTC10568_01616 (ligA)
Enzymes [BR:
alig01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC10568_01616 (ligA)
DNA replication proteins [BR:
alig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC10568_01616 (ligA)
DNA repair and recombination proteins [BR:
alig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC10568_01616 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC10568_01616 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC10568_01616 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC10568_01616 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
HHH_3
DNA_pol_lambd_f
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
VEB26866
LinkDB
All DBs
Position
1:complement(1590953..1593001)
Genome browser
AA seq
682 aa
AA seq
DB search
MPLLSQMQDQSNTTFAQLEALRQKLREYEYYYHVLDNPLVPDAEYDRLMNELKNLEWQHP
EWISADSPTQRVGAKPLDGFAQVTHEMPMLSLDNAFSDEELDGFLRRMESYITEDPHTLA
FCCEPKLDGLAVSILYVDGVLSQAATRGDGTTGEDITSNIRTIRNIPLKLNMDNPPARLE
VRGEVFMPQKGFEALNERALEKGEKTFANPRNAAAGSLRQLDPKITRQRPLVLNAYGIGV
YESDDELPATHFERLQWLKSIGIPVNNEIRLATGREQLLAFYADIQAKRPTLGYDIDGTV
LKVNDIGLQEQLGFISRSPRWAIAYKFPAQEEMTVLNDVEFQVGRTGAITPVAKLEPVFV
AGVTVSNATLHNGDEIERLGIVIGDTVIIRRAGDVIPQIVGVVMERRPENAKKIEFPTAC
PVCESAVVRVEGEAVARCTGGLFCGAQRKEALKHFVSRKAMDIDGVGEKLIEQLMERELV
HTPADLFKLDQTTLMRLERMGEKSAQNALNSIEKAKNTTLARFLFALGIRDVGEATAQNL
ANHFHNLDAIRAATFEQLQEVQDVGEVVANRIVRFWQEPHNVTVVEDLISQGIHWQDVVQ
VEIADNPLKGKSVVLTGTLTQLTRDQAKALLQSFGCKVSGSVSSKTDYLIAGEKAGSKLT
KAQELGVKVLTEQEFIALTGEN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgcctttattatcacaaatgcaagatcaatcgaacacgactttcgcacaattagaagcg
ttgcgccaaaaattacgagaatacgaatactattatcacgtattggataatccgttagtg
ccggatgcggaatacgaccgtttaatgaacgaattaaaaaatctggaatggcaacatccg
gaatggattagcgcagattcgccgacccaacgtgtcggggcgaaaccgctggacggcttt
gcacaagtcacgcacgaaatgccaatgttatcgctggataatgctttttccgatgaagaa
ttagacggttttttacgccgtatggaaagttatattactgaagatccgcatacgcttgct
ttttgttgcgagcctaaattagatggtttggcggtcagtatcttgtatgtggacggcgtg
ttaagccaagcggcaacccgtggtgacggtaccaccggcgaggatattacctcaaatatt
cgtaccattcgcaatattccgttaaaactgaatatggataacccgccggcacgtttagag
gtacgcggcgaggtgtttatgccgcagaaaggctttgaagcactgaacgaacgtgcgttg
gaaaaaggcgagaaaacctttgctaatccgcgtaatgcggcggcaggctcattacgtcag
ttagatccgaaaatcactcgtcagcgcccgcttgtgttaaatgcctatggaatcggtgtg
tatgaatcggatgatgaattaccggcaactcattttgaacgtttgcaatggctgaagtct
atcggtattccggtcaataacgaaattcgcttggcgacaggacgtgagcagttacttgcg
ttttatgcggatattcaagcgaagcgtccgacactcggctatgatattgacggcacggtg
ctaaaagtgaatgacattggcttacaagaacagctcggctttatttctcgttcgccgcgt
tgggcgattgcttataaattcccggcacaagaagaaatgacggtgctgaatgatgtggaa
tttcaggtgggcagaaccggggcgattaccccggtcgcaaaattagagccggtatttgtt
gccggtgtgacggtgagtaatgccactttgcataacggcgatgaaattgagcgtttaggc
attgtcatcggcgatacggtgattattcgtcgtgccggtgatgtgattccgcaaattgtc
ggggtagtaatggaacgccgtccggaaaatgcaaaaaaaatcgaatttccgaccgcttgt
ccggtctgtgaatcggcggtggtgcgtgttgaaggcgaagcggttgctcgctgtaccggc
ggtttattctgtggcgcacagcgtaaagaagcgttgaaacattttgtttcgcgtaaagcg
atggatattgatggtgtcggcgagaagttgatcgagcagttaatggagcgtgagctggtg
catacaccagcggatctgtttaaacttgatcaaactactttaatgcgtttggagagaatg
ggtgagaagtctgcgcaaaatgcgttgaacagcatcgaaaaagcgaaaaataccactttg
gcacgtttcttatttgcattaggcattcgtgatgtcggcgaagccaccgcacaaaattta
gcgaatcacttccataatttagatgcgattcgtgcggcaactttcgagcaattacaagaa
gtacaggatgtcggcgaagtggtggcaaatcgtatcgtgcgcttctggcaagaacctcac
aatgttacggtggtcgaagatctgatttcacaaggcatacattggcaagatgtggtgcaa
gttgaaattgcggataacccgctaaaaggtaaaagcgtggttttaaccggtacgctgact
caattaactcgagatcaagcaaaagcattgttacaaagtttcggttgtaaagtatccggc
tcggtttcaagtaaaaccgattatttgattgccggcgaaaaggcgggatcaaaattgaca
aaagcgcaagaattgggggttaaagtcttaaccgaacaagaatttatcgctttaaccggt
gaaaattaa
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