Aliinostoc sp. HNIBRCY26: ACQFX9_21830
Help
Entry
ACQFX9_21830 CDS
T11712
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alih Aliinostoc sp. HNIBRCY26
Pathway
alih03030
DNA replication
alih03410
Base excision repair
alih03420
Nucleotide excision repair
alih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACQFX9_21830 (ligA)
03410 Base excision repair
ACQFX9_21830 (ligA)
03420 Nucleotide excision repair
ACQFX9_21830 (ligA)
03430 Mismatch repair
ACQFX9_21830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alih03032
]
ACQFX9_21830 (ligA)
03400 DNA repair and recombination proteins [BR:
alih03400
]
ACQFX9_21830 (ligA)
Enzymes [BR:
alih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACQFX9_21830 (ligA)
DNA replication proteins [BR:
alih03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACQFX9_21830 (ligA)
DNA repair and recombination proteins [BR:
alih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACQFX9_21830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACQFX9_21830 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACQFX9_21830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACQFX9_21830 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
XTB90569
LinkDB
All DBs
Position
5152839..5154875
Genome browser
AA seq
678 aa
AA seq
DB search
MSQIQSEVSRAQELRQLLQKASYAYYVLDAPIMEDAVYDQLYRELQQLEIQYPELITADS
PTQRVGERPATHFTSVRHNVPLYSLENAFNIDELQTWDQRWHRQVSPTDPPAYVAELKID
GSALALTYHNGVLVRGATRGDGEMGEDITQNVRTIRSIPLRLNFDGLEVIEKIEVRGEAF
LPLEVFQQINEQRQKAGEQLFANPRNAAAGTLRQLDSRIVARRRLDFFAYTLHIPGRDDA
SIANTQWEALELLQKLGFRVNPNHKLCQSLADVADYYKYWDTERLNLPYMTDGVVVKLNS
YKLQEQLGFTQKFPRWAVALKYPAEEAPTRVENIAVNVGRTGALTPLAEMRPVELAGTTV
SRATLHNSDRIAQLDIRIGDTVIVRKAGEIIPEVVRVLKELRPDNTQPFIMPTHCPVCGQ
SVVRETGEAVTRCVNASCAAILKGSIEHWVSRDALDIKGVGEKLVHQLVDKGLVHSVADL
YDLTTEQLLVLERMGQKSAEKLIGAIAQSKNQPWSRVLYGLGIRHVGSVNAQLLTEKYRT
VEQLATAKQSDIEGIYGIGAEIAQSVYQWFRIDANQNLIARLQTAGLQFANIEEALTINN
AILKLVGKTFVVTGTLPTLKRDEAKALIQKSGGKVTDSVSKKTDYLVVGEDAGSKLEKAR
ALGIIQLTETQLLEMLEN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaaattcaatcagaagttagtcgcgcgcaagaattgcgccaattactgcaaaaa
gctagttatgcttattatgtcttagatgcgcccataatggaggatgccgtctatgaccag
ttataccgagaactgcaacagttagaaattcaatacccagaactcattacagcagacagt
ccgactcaacgcgtcggggaaagaccggctacacactttacctctgtacgccacaatgtt
ccgttgtacagtctggagaatgcttttaatattgacgaattgcaaacatgggatcaacgt
tggcatagacaagtatcgcctacagatccgcctgcatatgtggcggaattaaaaattgat
ggttcggctctggctttaacttaccacaatggcgttttagtcaggggtgcaactaggggt
gatggagaaatgggagaagatatcacccaaaatgtgcggacaattcgttctattccctta
cggttaaattttgatggcttagaagtaatagagaaaatcgaagtgcggggggaagcgttt
ttaccgttggaagtgttccaacaaattaatgaacaacgccaaaaagcaggagaacagtta
tttgctaatccccgtaatgcggcggctggtacactaagacaattagactctcgcattgtg
gcgcgacgaagattagattttttcgcttacacactgcacattccagggagagatgacgca
agtattgcaaatacgcaatgggaagcgttggaattgttgcaaaaattgggttttcgggta
aatcccaatcacaagctttgccaatctctagctgacgttgcagattactataaatactgg
gatacagaacgattaaatctcccctacatgacggatggggtggtagtaaagttaaattcc
tataagttgcaagaacagttaggatttacccaaaagtttccccgatgggcggtagcctta
aagtaccccgccgaagaagcacccacccgtgtagaaaatattgccgtaaatgtgggacgc
acaggcgcgttaacacctttagcagaaatgcgtcccgtagaattggcgggaactacagta
tctcgcgctaccttacataatagcgatcgcattgcccaattagatatccgcatcggtgat
acagtcattgttcgcaaagctggggaaatcattcccgaagtggtgcgggtactcaaagaa
ttacgtccagataatacccaaccttttattatgcctacccattgtcccgtttgtggacag
tctgtggttagggaaactggggaagctgtaacgcgctgtgtgaatgcttcctgtgctgcg
attctcaaaggttcaattgaacattgggtgagtcgcgatgctttagatattaaaggtgtg
ggagaaaaattagtccatcaacttgtagataaaggtttagtgcattccgttgctgattta
tacgacttgacaacagagcaattattagtcttagaaagaatgggacaaaaatcagccgaa
aaattaattggggcgatcgcacaatcaaaaaatcagccgtggtcaagggtattatatggt
ttaggcatccgtcacgtcggcagcgtcaatgctcaattactcacagaaaaataccgcacc
gtagaacagttagccacagctaaacaatcagatattgagggtatctatggtataggtgca
gaaattgcccagtctgtttatcaatggtttcgcattgatgccaatcaaaatttaattgcc
cggttgcaaacagcagggttacaatttgctaacattgaagaggcactaactattaataat
gctattctcaagctagtaggtaagacctttgtcgtaacaggaactttgcccacgttaaag
cgcgatgaagccaaagctttaattcaaaaatctggtggtaaggtgacagattcagtgagc
aaaaaaactgactatctagttgtgggtgaagacgcaggttctaaattagaaaaggcacga
gctttgggaattatacaattaactgagacacaattattagaaatgttagaaaattaa
DBGET
integrated database retrieval system
