Aliiglaciecola sp. LCG003: QR722_07700
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Entry
QR722_07700 CDS
T09143
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alii
Aliiglaciecola sp. LCG003
Pathway
alii03030
DNA replication
alii03410
Base excision repair
alii03420
Nucleotide excision repair
alii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QR722_07700 (ligA)
03410 Base excision repair
QR722_07700 (ligA)
03420 Nucleotide excision repair
QR722_07700 (ligA)
03430 Mismatch repair
QR722_07700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alii03032
]
QR722_07700 (ligA)
03400 DNA repair and recombination proteins [BR:
alii03400
]
QR722_07700 (ligA)
Enzymes [BR:
alii01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QR722_07700 (ligA)
DNA replication proteins [BR:
alii03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QR722_07700 (ligA)
DNA repair and recombination proteins [BR:
alii03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QR722_07700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QR722_07700 (ligA)
MMR (mismatch excision repair)
DNA ligase
QR722_07700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QR722_07700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
Ntox3
Motif
Other DBs
NCBI-ProteinID:
WJG10901
LinkDB
All DBs
Position
1810276..1812309
Genome browser
AA seq
677 aa
AA seq
DB search
MTTSVNLVQQINALRSQLNEYNYQYYVLDDPSVPDAEYDRTMQQLKDLEAANPELRSADS
PTQKVGGKALSAFTQVEHEVPMLSLDNAFNEEELTSFDKRIKDRLKQDISIQYSCEPKLD
GLAVSILYENGSLVRAATRGDGRVGENITNNVKTIANVPLRLRGEAIPARLEVRGEVFMP
KKGFETLNEQQKLADKKVFVNPRNAAAGSLRQLDPKITASRPLMFYAYSLGVVEDPVVAL
ANSHSSRLQQLANWGLPVCKEIDVAEGIERCHEYFNKIGQQRDALSYDIDGVVFKVDDIE
LQQALGFVSRAPRWAIAEKFPAQEQMTKLIDVEFQVGRTGAITPVARLEPVFVGGVTVSN
ATLHNQDEIQRLGVKKGDTVIIRRAGDVIPQIVSVVDHLRPDDASEIEFPEECPVCRSHI
EKIEGEVVARCSGGLFCAAQRKEAMKHFASRKALDIDGLGDKLVEQLVDQGLVESPADFF
KLNVAQLANMERMGEKSAANLVNALGQSRKTTLAKFLYALGIREVGETTAANLASHFRSI
EALAEATVEALQEVNDVGVIVANHVYHFFHEAHNIKVLEDLIDAGVNWPAIEQVAADEMP
LHGQTFVLTGTYESLDRNEAKTKLQRLGAKVSGSVSAKTHYVVAGAKAGSKLTKAQELGV
EVLTEEQMLALFTQHKD
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgtcggttaatcttgtacagcaaattaacgcacttcgcagccagctaaatgaa
tacaattatcaatattacgttttggatgatcccagcgttcctgatgcggaatatgatcgt
accatgcagcagcttaaagacttagaagcggctaatcctgagctacgtagtgccgactca
cctacccaaaaagttggtggcaaagcactcagtgcatttacccaagttgaacacgaagtt
cccatgttgtccctcgacaacgccttcaatgaagaagagttaaccagttttgataagcgt
atcaaagataggttgaaacaagacataagcattcaatatagctgtgaacccaagctagat
ggcttggctgttagcatcttatatgaaaatggctctttagtccgagcagccacacgtggt
gatggcagggtgggagaaaatatcactaataacgttaaaaccatcgcgaatgtccccctg
cgattgcgcggagaagccatacctgctcgcctggaggtcagaggcgaagtgttcatgcct
aaaaaaggttttgagacgttaaacgaacagcaaaaattagccgataagaaagtttttgtt
aatcctcgtaatgctgctgcgggaagtttgcggcaactggatccgaaaattacggcaagt
cgacctttgatgttttatgcttactcattaggcgtggtcgaggatcccgtggtggcttta
gccaattcgcattcatcgcgattacaacagcttgctaattggggattaccagtgtgcaaa
gagattgatgtggccgaaggcattgaacgttgtcatgagtattttaataaaattggtcaa
caaagggacgctttaagctatgacatcgatggtgtggtatttaaagtagacgatatagaa
ttgcagcaggcgttaggctttgtgtcaagggcccctcgctgggcgatagctgaaaaattt
ccagcacaagaacaaatgaccaaactaattgatgtggaatttcaagttggtagaacgggc
gcaataaccccagtggcccgcttggaacccgtttttgttggcggcgtaacagtgtctaat
gcgaccttgcataatcaagacgaaatccaacgccttggtgttaaaaaaggcgataccgta
atcattcgccgagccggcgatgtgattcctcagatagtgtcagtggtagatcacttacgc
cccgatgatgccagcgagattgaatttcccgaggagtgtccggtttgccgctcgcatatt
gaaaaaattgaaggtgaagtcgttgctcgctgcagtggtggtttattttgtgccgcccaa
cgtaaagaagcgatgaagcattttgcctcgcgaaaagccctagatattgatggtttagga
gacaaattagtcgaacaactggtagaccagggcttggttgaaagccccgcagacttcttt
aaattgaatgttgctcagcttgccaatatggaacgcatgggcgaaaagtcagcggctaat
ttggtcaatgcacttggtcaatcccgtaaaacgactttggcgaagttcttgtatgcctta
gggatcagagaagtaggcgaaaccaccgcagccaatttggccagccatttcagaagcatt
gaagcattagctgaggcaactgttgaggcccttcaagaggtcaatgacgtgggggttatc
gtggccaatcacgtttatcattttttccatgaagcacataatatcaaggttttagaggat
ctgattgacgccggcgttaattggcctgccattgagcaagtggcggctgatgaaatgccc
ttacacggtcaaacatttgttttgacgggtacttatgagagcttggataggaatgaagct
aaaaccaagctgcagagattaggcgcaaaagtgtcaggcagcgtatcggctaaaactcat
tatgtagttgcaggtgctaaagctggctcgaaattaactaaggcgcaagagttaggtgtt
gaagtgttaaccgaagaacagatgctagctttgtttacgcaacacaaggactaa
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