Austrofundulus limnaeus (annual killifish): 106513529
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Entry
106513529 CDS
T06063
Symbol
pcdh15
Name
(RefSeq) protocadherin-15 isoform X1
KO
K16500
protocadherin-15
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
alim03037
]
106513529 (pcdh15)
04515 Cell adhesion molecules [BR:
alim04515
]
106513529 (pcdh15)
Cilium and associated proteins [BR:
alim03037
]
Primary cilia and associated proteins
USH complex and associated proteins
106513529 (pcdh15)
Cell adhesion molecules [BR:
alim04515
]
Cadherins
Protocadherins
106513529 (pcdh15)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
Fibulin_C
Big_9
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
106513529
NCBI-ProteinID:
XP_013857865
UniProt:
A0A2I4AQW1
LinkDB
All DBs
Position
Unknown
AA seq
2163 aa
AA seq
DB search
MQRGWWLVRWLGTGMAILSLLTYSWGQNTEDWQYEECKLSRPGPPATIVTVDEESPNGTV
LVENMQINGRSQDPGRTISLTLLENYNYWVILDPAKQRLYLNSTGRVLDRDPPNSITSIV
VQVQCTNELIGTVILHEVRIVVRDKNDNTPTFQQPRYYVAINELTPVGTTIFTGFSGDNG
ATDIDDGPNGQIEYSILYNPNDPASNRTVRVGNTLSGNILLAERLNYEDKTRYLVLVQAS
DRAPYPPNRRSATTTLTVDVLDGDDLGPMFLPCVLVNNTHDCTPLTYRAAIPELTQPSKL
NPLNVTPPIRAVDMDRNIQPPSDRPGILYFILVGQPATYPEYFTLNRTTAEVRVLKPISR
DLYQRFTLIIKAEQDNGHPLPAFADLIIEILDENNQAPYFQFATYQGYVSEASPVGTTIS
TSANLTSPLEIIALDNDIEETKDPLVTITLNDYNLIFSLTPTGIIRYLKLLKPVDRETQV
AYTFTMVASDGVQQSSPVTVNILVIDANDNTPTFAEVSYSVQVFTNMQPGETVLQLTAVD
ADEGLNGLVTYEILAGAQGNFIINNRTGRIIVAPGVTLVVGRSYALTVRASDNAPDNQRR
SSITTVYIEVLPPNNQSPPRFPLSTYNLEISEAMRIGAILLNLQATDRENDPITYRIVSG
DSQKVFNLSETIGLLLLSKPLDRETTDQYRLIVTASDGNLGGTSTATVSIVVTDVNDNDP
VFNRTXSTNFTVREEKANLFVGQVLATDPDAGANGQVYYRIVNHPDLFVINANGSIYTRV
PLDRELRSDYELVIEASDGAVDPRRTTLTVTVKVLDIDDNSPVFSQEIYMVNVPENTPVG
TVVLKLSAVDPDLFSNVTYRIKTESAKQLFSLNRVTGELTLLQLLDFEGLAAMGMSTSYS
FLVEAVDQGEVMPPGQANVTIRITDMNDFAPIFTQDLYKGLVAPNAEKGTVITTVFAEDQ
DPPGTSASFVRYRVDMERSPYSGSIFDVELQTGRVITKVNLNEEPSVTFKLYVIAFDDGE
PVKSNSTLVEITVLQPSRIPIFTEEEYTFSPVKELAPVGTPVGTILAAAINQTIFYSIVS
GNELGHFKVNNRTGVISTAKLLDYENITSYILRVQADSMLVVMSNLRVPSKTNTAKVYIN
VEDENDNPPVFSRKLYIGGVTEDTKIFSSVLKIVATDRDTRNFSAMAYRLIIPPTTDGQD
SFVIETYTGIIKSAMMFRNMRRSYFKFVVVATDNYGKGFSSTADVVVSVVNALDMQVVVS
TVPPTLVEEKKEELISILERHVQDQIPGAKVIVESIGPRRYGDGYELEDYSKSDLMVYAI
DPLTNRAISPLELFKFLDGNVLDINKEFQPHLGEGGRILEIRSPDVVASVKKAAQAVGYT
EGALLALAIIIILCCIPAILIVMVTYRQFKERQAECAKTARIQMALPPGGKKAPAAAPSA
NLYEELGDSSIRRGGRPQQQLLRPSLLRPEELSMESGIDPGQDYYAQDYYNYDQGYDFPQ
YGSRRRLITPMYDEYGEVIMEDDGYYYSPHDPEGRGRGRGRGGMRGRGGPPKRVAFRDLP
PEEETEQAEPEEEGEPSKAAKRLKSVMKLSKFLAASKGGQPPSDAGPSPWKKAKMLKMFG
AGKKDKDYAKLMSARRIDSQESLADGPAAMGPIDSKSDARSRLSKVLKKINITNKLQIRR
KSQSSASHVSGTESERDEEASQAASEDERKSKVSISVTESEPEERASESGRERDSDGESS
EKSSVDKDYLKVDLDRDDTNESTVDSEEEPDEELGDSDEESKSKSEEEETEKGSVSEKES
GTERESDSEKESDSEKSSATEKDSDTEKESETEKESDSEEESRSDKETESGTGTATEQEA
STGKDSVTEEDSDEESEEDEASESARESGVSARSSVRSSATEASRRSSASSVGATESGSR
SRSGSSAASLSASTARSSQRTTSSKTTSEKSGEEGSEAESGTGTASDAESMSGSEHSSSR
GSSKRKLSGSEMSERSSIGSQMTESEKSSARSQSASGSRSSKRSVLSRGSEDTITEESEE
EEEDEEEEEEEEPDTANESKDSASEYSDESASRRSSVASGDPGPSAPYSGHQYSTDIRSM
SEKSEDTYGGLSPITEVDEDAISSDKSSVSGSGSRGGAASKGSEETEETSDGDSESEGNS
TSF
NT seq
6492 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgggggtggtggcttgtcagatggctggggacaggaatggcaatcctttctttg
cttacctacagctggggccagaacacagaagactggcagtatgaggagtgtaagctgtct
cggccaggcccccctgcaaccattgtgactgttgacgaggagagccccaatggcacagtt
ttggtggaaaacatgcagattaatggccgttctcaagatccaggcagaaccatctccttg
acgctgcttgagaactacaactattgggtgatcctggatccagcaaagcagaggctttac
ctgaacagcactgggcgtgtcctggacagagatcctccaaactccatcacctccattgtg
gtccaggtccagtgcaccaatgagctgattggtacagtcattttgcatgaagtgcgaata
gtcgtgagggacaagaatgacaacacccctacttttcagcaacctcgttactatgttgca
ataaacgagctgacgccagttggaacaaccatttttaccggcttctcgggagataatggt
gccacagacattgatgatgggcccaatggacagatagaatacagcatcctttataatccc
aatgatccggcatctaacagaacagtaagagttggaaacaccctttcaggaaacatttta
ctagcagagagactaaactatgaagacaaaacacgctacctggttttggttcaagccagc
gaccgtgctccgtaccctcccaacagacgatcagccaccaccactctgactgtggacgtt
ctcgatggggatgacctgggtcccatgtttctgccgtgtgtgttggtgaacaacacacac
gactgcacccccctaacctatcgcgctgctatccctgaactcactcagccgagcaaactg
aacccgctgaatgtgaccccgcctatccgggccgtggacatggacagaaacatacagccc
ccatcggacagacctggaattctttatttcatcctggttggtcaaccagccacatatcca
gagtacttcaccctgaacagaaccactgcagaggtgcgtgttctgaagccaattagcagg
gacctgtatcagaggtttacccttattatcaaggctgaacaggataatggtcaccccctc
ccagcgtttgctgacctcattatcgaaatcctggatgaaaacaaccaggcaccgtatttt
cagtttgccacctatcagggctacgtgagtgaggcctccccagtgggtacaactatctct
accagtgccaacctcacctccccactggaaatcatcgcgttagataatgacattgaagag
acgaaagaccctttggtgacgattaccctgaatgactacaacctgatcttcagcctgacc
ccaactgggataatccgctacctgaagctcctcaagcctgtggatcgagagacgcaggtg
gcctatactttcacgatggtggcgtcagatggtgtccagcagagtagcccagtaactgtc
aacatcctggttattgatgccaatgacaataccccracgtttgccgaggtctcctacagt
gttcaagtctttacaaacatgcagccaggagagacggtgctacagttaactgcagttgat
gccgatgagggactaaacggtttggtgacatatgagatactggctggagcccaaggaaat
ttcatcattaataatcgtactgggcgcatcattgtggcaccgggtgtgacattagtcgtg
ggacgatcatatgcgctgactgtcagggcttccgataacgcaccagacaaccagagaagg
agctctatcactacagtctacattgaggttttgcctcccaataatcagagtcccccacgt
tttccactctctacctacaacctagagatcagtgaagccatgaggattggagctattctg
ctcaatctgcaggccacagacagagaaaacgatccgatcacatatcgcattgtgagtgga
gattcccagaaggttttcaacctctctgaaacgattggccttttgcttttgagcaagcct
ttggacagagaaactacagatcagtaccgtctaattgtcacagcttctgatggcaacctt
ggagggacgtctactgctactgtgagcatagtggtcactgatgtcaacgataacgaccca
gtctttaaccgcaccrtcagcactaactttaccgtccgagaagaaaaggccaacttgttt
gtagggcaagtcctggctacagatcctgatgctggagctaatggccaggtttactaccga
attgtcaatcatcctgacttgtttgtaatcaatgctaatggaagcatctacacaagagtg
cctctggacagggagttaaggagcgactatgagctggtcattgaagcctcggatggggca
gtggatccgaggcggactacgctgacggtcacggtcaaggttttggatatagatgacaac
agtccagtcttttcccaggaaatctatatggtgaatgtacctgagaacactcctgtggga
actgtagttctgaaactaagtgcggttgacccagacctcttctccaatgtcacatatcgg
attaagactgaatcggcgaagcaactgttttctctgaaccgtgtcaccggggagttgact
ctattgcagctccttgactttgagggcctggcagctatggggatgagtacctcttacagt
tttctggtggaagctgtcgaccaaggagaggtaatgcccccaggccaagctaacgtcacc
atccgcatcacagacatgaatgacttcgcccccatcttcacccaggatttgtataaaggc
ttagtggcacctaatgcagagaaaggaacagtcattaccactgttttcgctgaggaccag
gaccccccggggacttcagcaagttttgtacgctacagagtggacatggaaaggtcacct
tacagtggcagcatctttgatgtagagctgcaaactggtcgagtcatcaccaaggtcaac
ctcaacgaggagcccagcgtcacctttaaactgtatgtgatagcctttgatgacggggag
ccagtgaagtcgaacagcactttggtggagatcactgtccttcaaccctctcgcatccca
atcttcacggaggaagagtacacgttttctcccgttaaggagttggctccagttggcact
ccagtgggaactattctagctgccgccatcaatcagaccatcttttactccattgtttca
ggaaatgaactaggacacttcaaggtgaacaaccgtactggggtcatctccaccgccaaa
ctcctggactatgagaacatcacaagctacatcctcagggtccaagcagactctatgttg
gttgtcatgtccaacctacgtgttccttccaaaaccaacacagccaaagtgtacattaat
gtggaggacgagaatgacaaccctcccgtcttctccaggaaactctatatcggtggcgtc
acagaagacaccaagattttcagctctgtgctcaagatagtggctactgacagggacacc
agaaacttcagtgccatggcataccgtctaataattccaccgacaacagatggccaggac
agctttgtcatcgagacctacacgggcatcatcaagtcggccatgatgtttcgaaacatg
cgcagatcctatttcaagtttgtagttgttgccacagataactatggaaaaggtttcagc
agcactgctgacgtggtggtttccgtggtcaatgcattggacatgcaagttgttgtgtcc
actgtccctcccactttagtggaagagaagaaggaggagctcattagtatactggagcgc
catgtccaggaccagattcccggtgccaaggttattgttgagtccattggaccgcgtcgt
tatggtgacggctatgagttagaggactacagtaagtcggacctgatggtgtacgccatt
gaccccctcaccaacagggccatttcaccactggaactcttcaaatttcttgacggcaat
gtgctggacatcaataaagagttccaaccacacctgggcgagggcggccgaattcttgag
atccgctcaccagacgttgtggccagtgtgaagaaggctgcccaggctgtagggtacaca
gagggagctctgctggcactggccatcatcatcatcctctgttgcatccctgctatcctc
atcgtcatggtcacataccgacaattcaaggagcgacaagcagagtgtgccaaaactgcc
aggatccagatggctttaccaccaggagggaaaaaagctccagccgctgctccgagtgct
aacctctatgaggagcttggcgacagcagcataagaagaggcggcaggccgcaacagcaa
ctgctgaggccatctcttctgagacctgaggagctctccatggagtcaggtatcgaccca
ggccaggattactacgcacaagactactataattacgaccaaggttatgactttcctcaa
tatggcagtcggaggaggctgataactcccatgtatgatgaatatggagaagtgatcatg
gaggatgatgggtattactacagtccacatgaccctgagggccgtgggagaggcagaggc
cgtggtggcatgagaggtagaggaggtccaccgaagagggttgcctttagggatctgcct
ccagaggaggaaactgaacaagctgagccagaagaggaaggcgagccttcaaaggctgcc
aagagactaaagtctgtcatgaaactcagcaaattcctggcggccagcaaaggaggacag
ccaccatctgatgctggtccatctccatggaagaaagccaaaatgctcaagatgtttggt
gctggaaagaaggacaaggactatgccaaactgatgtcagctcgccgtattgacagtcag
gagagcctcgctgacggaccagcagctatggggccaatagacagcaagtctgatgctcgc
agccgacttagcaaagttttgaagaaaattaacatcaccaacaagttgcagatccggagg
aagtcacagagtagtgcaagtcacgtctcaggcacagagagcgagagggatgaagaggcc
tcacaagcagccagtgaggatgaaaggaaatctaaagtgtctattagtgtgaccgaaagt
gagccagaagaacgtgcgagcgaaagtggcagggagagagactccgatggggaatcctca
gagaaaagcagtgtggacaaagattatctaaaagtcgatttagatagggatgacacaaac
gaaagcactgtggactcggaggaagagcccgatgaagaacttggggattctgatgaggag
agcaagtctaaatctgaggaggaggaaactgaaaagggctccgtcagtgagaaagaatca
gggacagagagagagtcagactcagagaaagaatctgattcagaaaaatcctcagctaca
gaaaaagactcagacactgagaaagagtccgaaaccgagaaggagtctgactctgaggaa
gagtccagatctgacaaggagaccgaatcaggaacgggcaccgcaacagaacaagaagca
agcacaggtaaagattcagtgaccgaggaagactccgatgaagagtctgaggaggatgag
gcttcggaaagcgctagagaaagtggagtctctgcacgttcttctgtgaggtcatcggct
actgaagccagcaggagaagcagtgcttctagtgttggtgccactgagagtggcagcagg
agcaggagtggtagcagtgctgcatctttatctgcctcaactgccagatcatcccaaaga
accacatcgtcaaaaaccacctccgagaagtctggtgaggaagggagtgaagccgagtca
gggacaggtacagccagcgacgctgagtcaatgtccggaagcgaacattcttcatctcgc
gggtccagcaagaggaaactgtctggttcagagatgagtgagaggtcttccatcggcagt
cagatgacagagagtgagaagagctcagctcgatcccagtctgctagtgggagtcgtagc
tccaaaaggtctgtcctgagccgaggctcagaggacacaatcacagaggagagtgaagaa
gaagaagaagacgaagaagaagaggaggaggaggaacctgatacggccaacgagagcaaa
gattctgctagtgagtacagtgatgagtcagcatccaggaggtccagtgtggcgtctgga
gaccctggaccctcagctccctacagtgggcatcagtacagcactgacattaggagcatg
agcgagaagtccgaggatacatacggaggactgtctcctatcactgaagtggacgaggac
gccatctcttctgacaaatcttcagtcagcggctctggatcgaggggcggcgccgcatca
aaaggctcagaggaaaccgaggaaacgtcagatggtgattctgagtcggaagggaactcg
acatccttctag
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