Austrofundulus limnaeus (annual killifish): 106516970
Help
Entry
106516970 CDS
T06063
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03440
Homologous recombination
alim03460
Fanconi anemia pathway
alim04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106516970 (brca1)
09124 Replication and repair
03440 Homologous recombination
106516970 (brca1)
03460 Fanconi anemia pathway
106516970 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
alim01009
]
106516970 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
alim04121
]
106516970 (brca1)
03036 Chromosome and associated proteins [BR:
alim03036
]
106516970 (brca1)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106516970 (brca1)
Enzymes [BR:
alim01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106516970 (brca1)
Protein phosphatases and associated proteins [BR:
alim01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106516970 (brca1)
Ubiquitin system [BR:
alim04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
106516970 (brca1)
Multi subunit type E3
BRCC complex
106516970 (brca1)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
106516970 (brca1)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
106516970 (brca1)
BRCA1-A complex
106516970 (brca1)
BRCA1-B complex
106516970 (brca1)
BRCA1-C complex
106516970 (brca1)
BRCA complex
106516970 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
106516970 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_4
RTT107_BRCT_5
RING_XB3-XBAT31
zf-RING_2
zf-C3HC4_3
zf-Nse
zf-ANAPC11
zf-RING_4
zf-RING_5
PTCB-BRCT
zf-MIZ
zf-RING_6
zf-RING_10
Sina_RING
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
106516970
NCBI-ProteinID:
XP_013863057
UniProt:
A0A2I4B5P9
LinkDB
All DBs
Position
Unknown
AA seq
1346 aa
AA seq
DB search
MKNPKASDVKKGITALWETLQCPICLDIMTIPISTKCDHQFCKFCIMKLLDGSKQSKANC
PVCKSKITKRGLQESPGFQRLVTGLQDMIKAYENDTGTNYFTGMSQQRGDSRVKNVDVTE
KPCNILSGNTFNIDLGNMEQNDRDVPLKSISSTVEAQNGFAQVMDLEDSSPFMTENEGLD
SGLGDGPPMSENKMSSTTDNLEPETTNIREKPTHGSKSKKKSAKLEAPAQEETERRLLRK
SSRTKRKTDLESDRIFEQKKKKSLEKVAEWLMKVPAETELEKPLEKAHDSDSYSSTSTLD
VEPHSFELNPRKEDHAKALEEQVFGAVYKRKSKGFDPPTAAEVLSHKRVSKLRKKKHTTL
SKEQQGIENKDDTSSDFFKEVEQMKAGHNCDMTKNVEEFNQISVNDKNEEHDVTCPVSDV
IQQQLETVTKKITSKTVQQVDSDLQDQGQVNLKSPAQKKAACSNSKTTRLDKKKLKKCAK
PLVLVGVQNRETSSKLRERSEEVQVQIENYQSSEDQETPVFRRTRSKKLQLCVEEVQGSH
KKATLKPCVPKKDRNVTKSSEVTKGKTLNFAPNATKTNGCVYDQDIGGIENLESSKKTFH
LAQAEKEKPHPETLFEVVAESRADTSDASVIAPTYENDKPANSPPNEVQQEPPVIEAKCA
QTESEANDSELDTEQLLRSFKAAKRKSFHLGDTNLKRSRLSDKGTVNGTEAEGGIETSQK
QMCXEIVKGSKNADESSCSDLIPPSNSPFQRKTAVDKPHHPVVEASFPDSSYSVGLSPNK
ISKLDRESPVVSQVVDSGLQFTTVEPEEPNEASKDSQVREGQLDFGKATEIDPNEHNLNA
EASLTPNDLMAPALQNTYKTTSSCSGEVSTHSSIKSNLRKKRTAQKLESSSESNSSGSKE
ELPTLTQLFGTSTHPPAGVEDQGGSGGEKTCKSVCDKTDGAEPQRFPPTCPSPDGLNSSQ
ASVDLFGTPDECDVPENDTGPMESSQFSSEVLETQQKIEMQKELVRLGKLISLVSEVLQE
KEGSPVREGPSETHQGCQNXSPDSHRPLLHEQEPDQDLCRKGVSNVEQGPSMRPSEEKGM
TEASQSRHGGITETVSAVKDTNMSKTPNSTSAAKTIKGCDSPSDXQENKENNSPPTERRN
VKLVLVSSGLGTAEQILVKKFAKRIGARVVSQVTPEVTHIIMRTDEQLVCERTLKYFLGI
AGRKWVVSFQWISECFKQKKLLDESPFEVRGDVVNGPNHQGPSRARNTEANNLLMKGYKI
CFQGPFTDMSTDELEWMVELCGAAVVKDPLLLDSKQKSHQLVIVQPRPESSSSSYSDLSR
KATVVTRGWLLDTVATYTLQNFNNYT
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacccaaaagcctcagatgttaaaaaggggattacagccctatgggagactctg
caatgtcctatatgcttggatataatgacaataccaatatctaccaagtgtgatcatcag
ttttgcaagttttgtataatgaaacttttggatggctccaaacaaagcaaagctaactgt
cctgtgtgtaaatccaagataaccaaaagaggtttgcaggagagtcctgggtttcagaga
cttgttacagggctgcaggacatgataaaagcatatgagaatgacactggaacaaactac
ttcactggaatgtcccaacagagaggagactccagagtcaaaaatgtggacgtaactgaa
aaaccttgcaacatattatctggcaacacatttaatattgacctgggcaacatggaacag
aacgacagggatgttcctctgaagtccatctcctcaactgtagaagctcagaatggattt
gcacaagtcatggacctggaagattcatctccttttatgacagaaaatgaaggcctggat
agcggcctcggtgatggcccaccaatgtctgaaaataaaatgtcgagcactacagacaat
ttggaaccagaaacaacaaacattagggaaaaaccaacacacgggagtaaaagcaaaaag
aaatctgccaaactggaagccccagctcaagaagagaccgaacgcagacttttaagaaag
tcctcaagaacgaagcggaaaactgatttagagtccgacaggatttttgagcagaaaaag
aagaaaagtttagagaaagttgcagagtggctcatgaaagttccagctgaaactgagttg
gagaaacctctggaaaaggcacatgactcggatagctactcgtccacgtcaactctggat
gttgaaccacacagttttgagttgaatcctaggaaagaagatcatgccaaagccctagaa
gaacaggtttttggtgcggtctacaaacgaaaaagtaagggttttgatcccccgacagct
gcagaggtactgtcccacaaaagagtttccaaactgaggaagaaaaagcatacaactctt
tctaaagaacagcaagggatagaaaataaagacgacaccagcagtgacttttttaaagaa
gtcgaacagatgaaagctgggcataattgtgatatgactaaaaatgtcgaagagtttaac
caaatatctgtaaatgacaaaaacgaagaacatgatgttacctgtcctgtgtcagatgtt
atacaacagcaacttgaaacagttactaagaaaataactagtaaaactgtgcaacaagtt
gacagtgacttgcaagatcaaggtcaggtaaatttaaagagtccagcgcagaaaaaagca
gcttgtagtaacagtaaaaccacaagattggacaaaaagaagctcaaaaaatgtgcaaag
cctcttgttttggttggagttcagaacagggagaccagttctaagctcagagaaagatca
gaagaagttcaagtacaaattgagaattatcagagcagtgaagaccaagaaacccctgtc
tttaggaggaccaggagtaaaaaacttcagctttgtgtagaagaagtccagggaagtcac
aagaaagcaactctgaaaccctgtgtgcccaaaaaggacagaaatgttacaaagtcatct
gaagtcactaaaggtaaaacactgaacttcgcaccaaatgccactaaaacaaatggatgt
gtttatgatcaagacattggaggcattgaaaacctggagtccagtaagaaaacctttcat
ttggcacaagctgaaaaggaaaagccacatcctgaaactctctttgaagttgttgcagag
tctcgtgctgacacatctgacgcatctgtgatagcgccaacatatgaaaacgacaagcca
gcaaatagtcctcccaatgaagttcagcaggaacccccggttatcgaggctaaatgtgcc
cagacagaaagcgaagcaaatgacagtgagctggacacggagcaacttctcaggagcttt
aaagctgctaaaagaaaatcttttcatcttggggacacaaatctaaagaggagtcgtttg
tcagacaaaggaactgtgaatgggaccgaagcagaaggtggcattgaaacttcacaaaag
cagatgtgtagmgaaatagtcaagggctctaaaaatgcggacgaatcgtcttgcagtgat
ttaattcctccttccaactcacccttccaaaggaaaactgctgtggataaaccacatcac
cctgtggtagaagcatcgttccctgatagtagctactctgttggtctcagtcccaataaa
atctcaaagcttgacagagaaagccctgtagtctctcaggtcgtagattctggcctccag
ttcacaactgttgaacctgaagagccaaatgaagcctcaaaggactctcaggtaagagag
ggtcagcttgattttggtaaagcgacagagatcgacccaaatgaacataacctaaatgca
gaggcctctttaacccctaatgatctgatggccccagctctacagaatacttacaaaaca
accagcagctgtagtggggaggttagcacccattcttccattaaatccaacttgaggaag
aagagaacagctcagaagctggagtcttcatctgagtccaatagcagtggttccaaggag
gaattaccaactttgactcaactcttcggaacatcaacccacccacctgctggagttgaa
gaccagggaggctccggtggcgagaagacgtgcaagagtgtttgcgataaaaccgatgga
gcagaaccacaacgttttccacctacgtgtcccagtccagacggtctcaactctagtcaa
gcatctgtggacttgtttggcacaccagatgaatgtgatgttccagaaaatgacactggt
cccatggaatcatctcaattctcaagtgaagtccttgagacacagcaaaaaatagagatg
cagaaggagctggtgaggctggggaaactgatttctctggtgtccgaggtgcttcaggag
aaagaaggcagtcctgtgagagaagggccctcagaaacacaccagggctgtcaaaatama
agcccagacagtcacagacccctcctccatgagcaggagccagaccaggatttgtgcaga
aaaggcgtttcgaatgtagagcaaggcccaagcatgaggccatctgaagagaaagggatg
actgaggccagtcagtcgagacatggcggcattacagagacagtatcggcwgtaaaagac
acaaacatgtctaagacgcctaattcgacctctgcagccaaaaccatcaaaggctgtgat
tccccatcagatgrgcaagagaacaaagaaaataacagtcctccgactgaaaggcgtaat
gttaagctggttcttgtatcgtctggactgggcaccgctgagcagatattggtgaagaag
tttgccaagagaattggggcccgtgtggtttcccaagtgactccagaggtgactcatatc
ataatgcgtacagatgagcagctagtgtgtgagcgcacactgaaatacttccttggcatc
gcaggcaggaagtgggtggtcagcttccagtggatttctgaatgcttcaaacaaaagaaa
ctccttgatgagagtccatttgaagtgagaggtgatgtggtgaatgggccaaatcaccag
ggtccctcaagagctcgaaacacagaagcaaataatctcctcatgaaaggctacaagatc
tgcttccaaggaccttttacagacatgtctacagatgaattggagtggatggttgagctc
tgtggagcagctgtagttaaagatccacttctccttgacagcaaacagaagtcccaccag
ctggtcatcgtccagcccagaccagagtcgtcgtcttcctcgtacagcgacctctccaga
aaagccacagttgtgacccgcggttggctgttggacaccgtggcgacgtacaccctgcaa
aacttcaacaactacacgtga
DBGET
integrated database retrieval system
