Austrofundulus limnaeus (annual killifish): 106520959
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Entry
106520959 CDS
T06063
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
alim03036
]
106520959 (smchd1)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106520959 (smchd1)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
106520959 (smchd1)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
106520959 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
DUF6856
rve
Motif
Other DBs
NCBI-GeneID:
106520959
NCBI-ProteinID:
XP_013868750
UniProt:
A0A2I4BLY2
LinkDB
All DBs
Position
Unknown
AA seq
1947 aa
AA seq
DB search
MIQVYDCRSKNSKVSKKTLDSSDLNFNGFLQVVHKTFAVPSCETFVLVTTDRTVVDHDKF
EELQDGCTLYLLEHEDQALPAATEEDIKFVPHYNTLVESGTCEYFAEGQKSLPCSFAELV
DNALSATAKNTGVRTIEIQMLFDKYFGKPAIIVMDNGCGMTSKRLNNWAVYRLSKFTREN
SRFESDKEDYIRPEHVPRSLNSDISFFGVGGKRAVFHIGDSVRMISKPTGSPDVHELVLS
KEDFKRKEQNKEDVYKGTILNRKPGDFSHVTDDERFLRAIIAKETENESFTAVVITGVCP
EHIDYLKQHFDDWTRELAHIYHYYIHGVSGNDLRSTNRKVDELPKIDIKISLLEKPPKNP
RVMNLREVEEDMQTLYINAAVDTFEFMATTSDGGTVEGVLRYHPFLYDRETYPKDPYIGQ
APVEDDDYENESGSLNQARGKRDIFECFWNGRLIPYTTVSEFDWCSRPVKSTLPAECYSR
FSGVLFTDDKFLVNANKLKFMNLEMKLKSKDTIFTPDANVQKTSKRGNIQKEFTQWLQNC
HEKFDKQVKFLGYIDTITRKDVAIKKQHPWATFSSIELDGKQYKAGQLVKSQKTQPVLYG
SVVRFMLYGNHDCNVYATGGQVEIKREPGALYDNFTRIIPISKIDRNVTDENIKKNIESD
LDKVPEKLKVEWPENNIFSQNASHPAGTPLGPLKVEILNRKGLSTSSRINTGGQGSGMRL
SILLRVVHHGPKGEKEVANFVAPYVTNTGHWFKKIETLTDLGKYTLKLNTMLSENRATVY
GGRPLPSYVLKFTIKEGSADHFTVGAVSPTVRVGVPFNIPLQIKDFYDHPTAPPPKLLPA
LKCSGLELTYESVSCSGTTFTINGVKTKGKXGNYQQSKSYDLKVTLPGLKNDTQTIAIGL
LPGNPHSLFVKPNTDVVKVENGNSVTFNVEVHDEAGNITANLKQTVHCQAPGLPVVVADC
SSTGAGQLVTKPINLNITNGEPQMLEVEFNMPNQKHIAPVKIQLKVVPSSRVSQMKLFCQ
GVETFTLRDKEKIEWPAGGMLENLFYKLYDESGMEVPITSEIASSMKVTWTTDVKRRSLM
KGRLPDVQVPTRVTEERFHQVSYQELSVSSCFTIVPCPDEPARLKATLPQNTLKLGEILS
GHINLELMDQYDNVTKKLTSACVKSMSVEAEGLDKSNISFKWQETSSSVAATGVRFLSGS
LGPRDMCFKYNNFTEHVIIALTAGVPSKLKLLNPPQESLQIFNGHGIPKPFLIQLCDNWE
NPSPDQRVVVEIRSSPQTLKVSTNVISQPVDXEGKASFRVISVKGTKGYYQLEFRGSFNN
KPIPGPSVQLTVIPDPNKPVKLQVNYDTSSSFCAGGTFPVFSVMVVSEEGSPITTFNPAD
MSMFLWEGDSSQIPSGATELKCSKPMENEKKECFHFRDKRIPECVGKYTILFNLRVDRTE
VLRSVPISINVVANQPVKLGPESQPPTPVVSYSTDISSRILVENMTLKIMDNFGNSAGQD
LKGKVVVSIRCPEGEESRNLPLFEGKTSSIQIILKDGSSHISRLAIMENSPGENGSRYIA
VFTAKVQTCALSQASFELPFHFYNDAENQRKMSELSRKKDELTATITKLEGVLRSFDDYQ
SQITTQIQDFSNKESDFKNKLKEMNINTQHLTIQDLENMAVEKVGEAEMIEKRPRRFCNI
PNNFQGHDVIGVVGHLAFIEDDDVARVISWHLAGDIDCVITRTTEAAKRVHHDSRRNQQV
MALDSFFVQQGDRPLPHIRNGYRLFDPPGNPIYAKDCLIFTREIQSCEKIFKNLLGTTIL
MDDLESAINYRKAVVXNKIQCPTILTRQGDRVNSRAKFGGAQNRAPPISRLKVFGAPLPQ
HYFILKQQIGLLSDYSKIMKKREKAEKEKNEYFVTWKPNQTQQRLDEKIKELEEIDEQLA
SIRQGKRGPEGAGEPSGIVAKRPRRTT
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atgatccaggtgtatgactgccgctccaaaaacagcaaagtttccaagaaaactttggat
tcaagtgatttgaactttaatggctttctccaagttgttcacaagacgtttgcagtccct
tcatgtgagacatttgtgttggtcacaactgacagaacagttgtggatcatgataaattt
gaggagcttcaggatggctgcaccctttacctgttagaacatgaggaccaagccctgcca
gctgcaactgaagaggacatcaagtttgtgcctcattataatactctggtcgagagtggg
acttgtgaatacttcgctgagggtcagaaatcactgccgtgctcttttgctgagctggta
gacaacgctctttcagccacagccaaaaacacaggagtgaggaccatagagatacaaatg
ctgtttgacaaatattttgggaaacctgccattattgttatggataatggctgtgggatg
acctcgaagcggctgaataactgggcagtatacagactctctaagttcacaagggaaaat
agcagatttgaaagtgataaagaggattatatacgtcctgaacatgtacctcgcagtctc
aacagtgatatatcgttctttggagttggaggaaagcgggctgtttttcacatcggagac
tctgttaggatgatcagcaaaccaacaggctccccagatgttcatgaactggttctttca
aaagaagayttcaagagaaaagaacaaaacaaagaggatgtttataaagggaccatctta
aacagaaagcctggagacttttcccacgtaacagatgatgagcgtttcctccgtgccatc
attgctaaggaaactgaaaatgaaagtttcacagctgttgttattacaggagtctgccct
gagcacattgactacctgaaacaacactttgatgattggaccagagagctagcgcacatt
tatcactattacattcatggagtcagtggaaatgacttgagaagcaccaaccgaaaagta
gatgagcttccaaaaattgacattaagatatctttattggagaagcctcctaaaaaccct
cgagtgatgaatctcagagaagtggaagaagacatgcagactctgtacatcaatgctgct
gtagacacttttgagttcatggccactacctcagatggcggcactgtggagggggtgctt
cgataccaccccttcctctatgacagggagacctaccctaaagatccatacataggccaa
gctcctgttgaagatgatgattatgaaaatgagtctggcagcttgaatcaagccagagga
aaaagggacatctttgaatgtttctggaatggacggctcatcccttacaccacagtttct
gagtttgactggtgctctcgacctgtgaaaagtacattaccagcagagtgttacagtcgg
ttttctggggtgcttttcactgatgacaaattcctggtcaatgctaacaaactgaagttt
atgaatctggagatgaaactgaagagcaaagacactatattcactcctgatgctaacgtt
cagaaaacatcaaaaagaggaaacatccagaaagagttcactcaatggcttcagaactgt
catgaaaaatttgacaagcaggtgaagtttcttggatacattgacacaataacacggaaa
gatgtggcaatcaagaaacagcatccctgggcaacattctcctccattgagttggatgga
aaacagtacaaagcaggacaattggtaaagtctcagaaaacacagccagttctttacggc
agtgttgttcgatttatgctgtacggaaatcacgattgtaacgtctacgccacaggagga
caagtggaaatcaaacgtgagcctggagcactttatgacaatttcaccaggatcataccc
atttcaaagatcgacaggaacgtcactgatgaaaacatcaagaaaaatatcgagagtgat
cttgacaaggttccagaaaagctaaaggtggagtggccagagaataacattttctctcaa
aatgcttctcatcctgctgggactcctttggggcctctcaaagttgaaatccttaacagg
aagggactctcaacctcatccaggatcaatacaggggggcaagggtcaggaatgagactg
agcattctcctcagagtagtccatcacggtcctaaaggagaaaaggaggttgccaatttt
gttgctccctatgtaacaaatactggacactggttcaaaaaaattgagactcttactgac
ttggggaaatacactctgaaactgaacacgatgttaagtgaaaatcgtgcaactgtctac
ggaggcagacctcttccgagctatgtgctcaaattcaccattaaagagggcagtgcagac
cacttcactgtgggtgcagtgagccccactgttcgtgtgggagtgccattcaacattcct
ctgcagataaaagatttttatgaccacccaacagcacctcctcccaaacttctgcctgcc
cttaaatgcagtggactagagctgacttatgagtcggtgagctgcagtgggaccacattc
accattaatggtgttaaaacaaaaggaaaakttggaaattaccagcaatccaagagctat
gacctgaaagtgacactgcctggattgaaaaatgatacacaaactattgctatcggtctt
cttcctggaaatccgcattcgctttttgtgaaaccaaacacagatgtggtcaaagtggag
aatggaaactcagtcacttttaatgttgaagttcatgatgaggctggaaacattacagct
aacctcaaacagacggttcactgtcaggctccagggcttcccgtggtggtggcagactgc
agcagcacaggagcaggccagcttgtgacaaagcccataaaccttaacataacaaacgga
gaaccacaaatgcttgaagttgaatttaacatgccaaatcagaaacacattgcaccagtc
aagatacagctgaaggtcgtgcccagcagtcgggtctcacagatgaagctgttttgtcag
ggagtggaaacatttacgctcagagataaagaaaagattgaatggccagctggagggatg
ctcgagaatctgttttataaactgtatgatgagtctggcatggaggtgccaatcacttct
gaaatagcctccagcatgaaggttacctggacaacagatgttaaacggagaagtttgatg
aaggggagactacctgatgtacaggtgcccacccgtgtgacagaggagcgtttccaccag
gtgtcctaccaggagctgagtgtgtcttcctgtttcaccattgtgccttgtccagatgaa
ccagcaaggcttaaagcaactctacctcaaaacacattgaagcttggtgaaatcttatct
gggcatatcaatttggagcttatggaccaatatgacaatgtgactaagaagctaacttcg
gcctgtgtgaagagcatgagtgttgaagctgagggtctcgacaaatcaaacatcagtttc
aaatggcaggagaccagcagttcagttgctgcgactggagttcgtttcctttccgggtct
ctcgggccaagagacatgtgcttcaaatacaacaactttacagaacatgtcataattgca
ctgactgcaggagttccttcaaaacttaaactactcaaccctcctcaggagtctttgcaa
atatttaatggtcacggcatccccaaaccattcctcatccaattgtgcgataattgggaa
aacccgtctccagaccagagagttgtggtagaaatcaggtcttcaccccaaacattaaag
gtgtcaacaaatgtcatttcacaacctgtcgacktcgaaggaaaggcatctttcagagtt
atttctgtgaaaggtacaaaagggtactatcagctggagtttagaggttcctttaacaac
aaaccaatccctggtccatcggtgcagctcacagtcatccctgatcccaacaaacctgtc
aaactgcaggtgaactacgacaccagttccagtttttgtgcaggaggcactttccctgtt
ttctccgtgatggtggtgtctgaagaaggaagtccgattacgacttttaaccctgctgat
atgtccatgtttctgtgggaaggagattcatcacagattccctcaggggccactgagctg
aagtgcagtaaacccatggaaaatgagaagaaagaatgttttcactttagagataaacgg
atcccagaatgtgttgggaagtacaccatcctgtttaatctgcgtgttgacagaacagaa
gttctgcgcagtgttccgatcagcataaatgttgtggccaatcagcctgtcaaactggga
cctgagtctcagccaccaacccctgttgtttcctacagtaccgacatctccagccgaatc
ctggttgagaacatgactctgaagataatggacaactttggtaattcagctggacaggac
ctgaaagggaaggtggttgtgtcgataagatgtcctgaaggtgaagagagcagaaacctt
cctctatttgaagggaaaacaagcagcattcaaattatcctaaaagacggaagttcccac
attagtagactggctatcatggagaacagccccggtgagaacggcagcagatacattgcc
gtctttacagccaaagtgcagacatgtgccttgtcccaggcttcttttgagcttcccttc
catttttacaatgatgctgaaaaccaaagaaaaatgtctgaactgtcaaggaagaaggat
gagctgactgctaccatcactaagctcgaaggagtgcttcgttcttttgacgattatcag
agtcagatcacaactcaaatccaggacttttctaacaaagagtcagacttcaaaaacaag
ctgaaagagatgaacataaacacacagcatctaacgatccaagatcttgagaatatggca
gtggagaaggtaggtgaagctgaaatgattgagaaaaggcccaggagattctgcaacatc
cccaataacttccaagggcacgatgtgattggagtggtaggtcatctggcctttattgag
gatgatgatgtggcgagggtcatctcctggcatttggcaggggacatagactgtgtgatc
accagaactacagaagcagctaagagagtccaccacgactcaaggcgcaatcagcaggtc
atggccctcgacagcttctttgtgcaacaaggagacagaccgctgccccacataagaaat
ggatacagacttttcgatcctcctgggaacccgatctacgccaaagattgtctgattttt
acacgggaaattcagagttgtgaaaagatctttaaaaacctccttggaaccaccatcctg
atggatgacctggagtctgcaatcaactacaggaaggcggttgtgkggaacaaaatccag
tgtcccaccatactgacccggcagggggacagggtcaattccagagccaaatttggagga
gcgcagaacagagccccacccatctcaagattaaaagtgtttggagcgccgcttccccaa
cactactttatactgaagcaacaaataggtctgctctcagactacagcaaaattatgaag
aagagagaaaaggcagaaaaagagaagaacgagtatttcgtaacttggaaaccaaaccaa
acccaacaaagactggatgagaaaataaaggagcttgaggaaattgacgaacaacttgct
tcaataagacaagggaaacgaggtcctgagggcgctggagagccatcaggcattgtggca
aaacgaccaaggaggacaacctaa
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