Austrofundulus limnaeus (annual killifish): 106522431
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Entry
106522431 CDS
T06063
Symbol
thbs1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04115
p53 signaling pathway
alim04145
Phagosome
alim04148
Efferocytosis
alim04350
TGF-beta signaling pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
106522431 (thbs1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106522431 (thbs1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
106522431 (thbs1)
04148 Efferocytosis
106522431 (thbs1)
09143 Cell growth and death
04115 p53 signaling pathway
106522431 (thbs1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
106522431 (thbs1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106522431 (thbs1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alim04131
]
106522431 (thbs1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106522431 (thbs1)
Membrane trafficking [BR:
alim04131
]
Endocytosis
Phagocytosis
Opsonins
106522431 (thbs1)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106522431 (thbs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
Laminin_G_3
EGF
TSP1_CCN
cEGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
106522431
NCBI-ProteinID:
XP_013870887
UniProt:
A0A2I4BT10
LinkDB
All DBs
Position
Unknown
AA seq
1169 aa
AA seq
DB search
MKQTGVFLLLMLWTCEGARVAESRDDNSVFDLFELIKVPSKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGPVFEIVS
NGKANTLDVVFSTENKQQVVSIEEADLATGHWRNITLFVQEDRVQLYAGCEEVNTAEMDA
PIQSVLTHEVPAGARLRVGKGAVNDRFMGVLQNVRFVFGTTLEAIMRNKGCQSFVTSDTM
ILNNLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLLSMFKELKGLGVVVKELSNELRQLTN
ENKLIKNRIGIHSGVCIHNGIMRKNKDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGNWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLGGRECVGEGRQT
EKCQKSPCPINGNWGPWSPWGTCSLTCGGGVQTRKRLCNNPSPLHGGKECVGDATDKQMC
NKKSCPIDGCLSNPCFSGAKCTSFPDGSWKCGKCPVGYTGNGIKCKDVDECKEVPDACFE
FNGVHRCENTQPGYNCLPCPARFTGPQPFGRGVEQAAATKQVCTPRNPCLDGSHDCNKNA
RCNYLGHFADPMFRCECKPGYAGNGHICGEDTDLDGWPNVDLVCVENATYHCKKDNCPNL
PNSGQEDYDKDGIGDACDDDDDNDSIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDNNGEGDACAVDIDGDGILNERDNCPYVYNVDQKDTDLDGVGDMCDNCPLEHN
PDQLDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDND
GIPDERDNCRLAFNPDQLDSDGDGRGDACMYDFDKDNVPDIYDVCPENFDISQTDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNAVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSSKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGTIYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagacaggggtcttcctgctcctgatgctgtggacctgtgagggcgcgagggtc
gcagagtccagagatgacaacagcgtgttcgacctgtttgagctcatcaaggtccccagc
aagaaccacggggtgaccctggtgaaaggagacgacccgtacagccccgcctacaagatc
ctgaacccggacctgatccccccggtccccgagagcgccttcagggacctgatcgactcc
atccacgccgagaggggcttcctcctcctgctcaacttcaagcagttcaaacggaccagg
ggcagcctcctgaccgtggagaagcgcgacggctcgggacccgtgttcgagatcgtctcc
aacggcaaggccaacacgctggacgtggttttctccacggagaacaagcagcaggtggtc
tccatcgaggaggcggatctggccacgggccactggaggaacatcacgctgttcgtgcag
gaggaccgcgtgcagctgtacgccggctgcgaggaggtgaacaccgccgagatggacgcg
ccgatccaaagcgtcctgacgcacgaggtgccggccggcgcgcgcctcagggtgggaaaa
ggggccgtgaacgaccggttcatgggggttctgcagaacgtgcggtttgtgttcggaaca
accctggaagccatcatgcgcaacaaaggatgccaaagctttgttacaagcgacacgatg
atcctgaacaatctgaacggctcctctgccatcagaacagagtacacaggtcacaagact
aaagacctgcagatggtctgcggcttctcctgtgaggatcttctcagcatgttcaaggag
ctgaagggycttggcgtggtggtcaaggagctgtccaatgagctccgccagctgacgaat
gagaacaaactgatcaaaaaccgcatcggaatccacagcggcgtctgcatccacaacggg
atcatgcgcaagaacaaagacgagtggacggtcgatgattgcacagagtgcacctgtcag
aactctgctacagtttgtcgtaagatctcctgcccgctgatcccctgtgccaacgctaca
gttcctgatggggagtgctgcccccgctgtggaacaccgagcgactatgcagaggacggc
tggtcgccctggtctgaatggacccattgttctgtgtcttgtgggcggggcattcagcag
cgtgggcgctcctgtgaccgtatcaataacaactgcgagggcacctctgtacagacccgc
gactgctacctccaggagtgtgacaagcgcttcaagcaggacggcaactggagccactgg
tccccctggtcatcatgctccgtcacctgcggcgccggtgtcatcactcgtatccgcctc
tgcaactcccccaccccgcagctcgggggcagggagtgtgtgggagagggccggcaaacc
gaaaagtgccagaagtctccctgtcccatcaacgggaactgggggccctggtctccgtgg
ggtacctgctccctcacctgtggtggaggtgttcagactcgtaagcgcctgtgcaacaac
ccctcccctctgcacggcggtaaagagtgtgttggcgacgccacagacaaacagatgtgc
aacaagaaatcctgtccaatcgatgggtgcttgtccaacccttgcttttctggagccaag
tgcaccagtttccctgacggttcctggaagtgtggaaagtgtccagttggctacacgggc
aacggcatcaagtgcaaagatgtcgatgagtgcaaggaagttccagatgcttgcttcgag
tttaacggtgtgcatcgctgtgagaacacacaaccaggctacaactgtttgccctgccct
gcccgcttcaccggaccgcagccgttcggccgaggcgtggagcaagctgcagcaaccaag
caggtgtgcacgcctcgtaacccctgcctggatgggagccacgactgcaacaaaaacgcc
agatgcaactacctgggtcacttygctgaccccatgttccggtgcgagtgcaagcctggt
tatgcaggcaatggtcacatctgcggagaggacacggatctggacggatggcccaacgtc
gatctggtctgtgtggaaaacgccacctatcactgtaaaaaggacaactgtcccaatctt
cctaactcgggtcaagaagattacgataaggatggaatcggtgatgcttgtgatgatgat
gacgacaacgatagcattcctgatgatagggacaactgtccgttcgtgtacaacccccgg
cagtacgactatgaccgcgatgatgtgggcgaccgctgtgacaactgtccttacaacagc
aacccggaccagaccgacacagacaacaacggggagggagatgcatgcgccgtggacatc
gatggagatggaatcctgaacgagagggacaactgtccttatgtatacaatgttgaccag
aaggacacagatctggacggggtgggagacatgtgcgataactgtcctctggagcataat
cccgatcagttggattcagatgatgaccgcgtgggagacaagtgtgatagcaaccaggac
atcgatgaggacggacaccagaacaatctggacaactgtccctacatccccaacgccaac
caggcggaccacgacaaagatggcaagggagatgcctgtgaccacgatgacgacaacgat
ggcatccccgatgaaagagacaactgcagactggccttcaaccctgaccagctggactcc
gatggggatggccgtggggatgcttgcatgtacgatttcgacaaagacaacgtgcccgat
atctacgacgtgtgtcctgagaacttcgacatcagccagacagacttccgcaagttccag
atggttcctctggatccaaaaggcacctcccagattgatcccaactgggtggttcgccac
cagggcaaggagctggttcagactgtcaactgtgatcctggcattgctgttggttaccac
gagttcaacgccgtggacttcagcgggactttcttcatcaacacagagagggacgacgat
tacgccggcttcgtgttcgggtaccagtccagctccaggttctacgtagtgatgtggaag
cagatcacgcaaacctactggtccagtaaacccaccaaagcccagggctactcaggcctg
tccatcaaagtggtgaactctaccactggccccggagagcacctgaggaacgccctctgg
cacacaggcaacaccccaggacaggtccgcactctgtggcacgacccaaagaatgttgga
tggaaagacttcaccgcctacaggtggcatctgatccacaggccgagaacagggctgatc
agagttgtgatgtacgaggggaaaaagatcatggcagattctggaaccatttatgataag
acgtacgcaggcggcaggctgggtctgtttgtcttctcacaagagatggtatacttctca
gacctcaaatatgaatgtagagatgcttaa
DBGET
integrated database retrieval system
