Austrofundulus limnaeus (annual killifish): 106527675
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Entry
106527675 CDS
T06063
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106527675 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106527675 (eftud2)
Spliceosome [BR:
alim03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106527675 (eftud2)
Complex C
U5 SnRNP specific factors
106527675 (eftud2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Roc
Ras
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
106527675
NCBI-ProteinID:
XP_013878102
UniProt:
A0A2I4CDM6
LinkDB
All DBs
Position
Unknown
AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDDDELDAEDRDVDEGDEDDDDEPADADEDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVRHKQFTLMEQELPATVYDMEFLAD
LMDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDADLRYTDILFTEQERGVGI
KSTPVTMVLPDSRGKSYLFNIMDTPGHVNFSDEVTSSMRISDGVVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSICFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKNAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGLVDMCVQHVPSPQDGAKTKIEHTYTGGLDSDLGEVMAECDPEGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYSLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDRSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLVL
SKQDAVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatttgtacgatgagtttgggaactacatcggtccagagctggattctgat
gatgatgatgatgagctggacgcagaggacagagatgtggatgagggtgatgaagatgac
gacgatgagcctgcagatgctgatgaagatgtccctggcatggaggtggtcctgcatgag
gacaagaaatactatcccacagcagaggaggtttacgggccagaggtggaaacaatagtt
caggaagaagacacacaacctctcacagagcccatcataaagcctgtgaggcacaaacag
ttcactttgatggaacaagagctaccggccactgtttacgacatggaatttcttgcagat
ctgatggacagtcctgagctgatccgtaatgtcaccctctgtggtcaccttcatcacggc
aagacctgttttgtggattgcctgattgagcagacgcacccagaaatcagaaaaagggat
gatgctgatctccggtacacagacatccttttcacagagcaggagagaggggtcggcatc
aaaagcactcctgtcaccatggtcctgcctgactccagaggaaaatcttacctgtttaac
atcatggatactccaggccacgtgaacttctccgatgaagtcacatccagcatgaggatc
tctgacggtgttgtgcttttcatcgacgcagcagaaggagtgatgctgaacaccgagcgg
ctgatcaaacacgccgttcaggagcgcatggccatcaccatctgcatcaacaaggtggac
cggctcatcgtggagctcaaactgcctcccactgacgcttattacaaactgcgccacatc
gtggatgaagtcaatggtttgctcagcacatattccacagacgagaacctggtggtgtct
cctctccttggaaatgtctgctttgccagctctcagtacagcatctgtttcaccctggga
tcattcgctaagatctactctgacacctacggtgatattaactataacgagtttgcaaag
cggctctggggagacatctactttaacccaaaaactcgtaaattcacaaaaaaygccccc
agcagcaactctcagcgcagctttgtggagtttgttctggagcctctgtacaagatcctc
tcacaggtggtcggggacgtggacacgtctctccccagagtcctggatgagctcgggatc
cacctgacaaaagaagaactgaaactgaacatcaggcctctgcttcggctcgtctgtaac
cgcttctttggagagttcactggccttgtggacatgtgtgtgcaacatgtcccttcacca
caagatggcgctaagactaagatagagcacacgtacaccggaggtctggactcagatttg
ggggaggtcatggccgagtgtgatcctgaaggtccgctgatgtgccacaccacaaagatg
tacagcacggaggacggggtgcagttccacgcgttcggccgggttctgagcggcaccatc
caggcgggtcagccggtgaaggtgctcggagagaactactcgctggaggacgaggaggac
tctcaggtctgcaccgtgggtcgcctctggatctctgtagccagatatcaaatagaggtg
aatcgagtgcccgcaggcaactgggtgctgattgaaggctgtgaccagccaatcgtgaag
accgccacaatcacagagcccagagggaacgaagaggctcagattttcaggccattgaag
ttcaacacagcatcagtaattaaaatcgcagtggagccggttaacccatcagagctgcca
aaaatgctggacggtctgaggaaggtcaacaagagctatccctctctcaccacaaaggtg
gaggagtctggagaacacgtcatcctgggaacaggcgagctttacctcgattgtgtcatg
catgacttgaggaagatgtactctgagattgatattaaagtcgctgacccagttgtgact
ttttgtgaaaccgttgtggagacgtcgtcactgaagtgcttcgctgagacgccaaacaaa
aagaataagatcaccatgatagccgagcccctggagaagggactggccgaggacatcgag
aacgaggtggtgcagatcacgtggaacaggaagaagctcggggagttcttccagactaaa
tacgactgggatctgctggctgccaggtccatttgggccttcggacccgacaccacggga
ccaaacattctggtagacgacacactgccttcagaggtggacaaggcgctgctgggttct
gtcaaggacagcatcgttcagggcttccagtggggaaccagggagggacctctctgtgac
gagcccattcgaaacgtgaagttcaagatcctggatgctgtgatcgctcaggagcctctt
cacagaggaggaggtcaggtcatccccacagccaggagggtggtgtactctgcttttctc
atggccacgccgaggctgatggagccgtattacttcgtggaggtccaggctccagctgat
tgtgtgtctgcagtctacacggtgctggctcgaaggaggggtcacgtcacccaggacgct
ccgattcctggttcccctctctacacgatcaaagcttttatcccggctatagactcgttt
ggctttgagacggacctccgcacccacactcagggtcaggccttcgctctgtccgtcttc
caccactggcagatcgtacctggtgaccccctggacaggagcatcgtgatcaggcctctg
gagccccaacctgcccctcacctggccagagagttcatgatcaagaccagaaggcgcaag
ggtttgagtgaagatgtgagcatcagtaagttcttcgatgatcccatgttgttggttctg
tccaaacaagacgccgtgcttaattatcccatgtga
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