Austrofundulus limnaeus (annual killifish): 106528098
Help
Entry
106528098 CDS
T06063
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
alim04040
]
106528098
Ion channels [BR:
alim04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
106528098
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
DUF5580
IQ
Motif
Other DBs
NCBI-GeneID:
106528098
NCBI-ProteinID:
XP_013878628
UniProt:
A0A2I4CF67
LinkDB
All DBs
Position
Unknown
AA seq
1797 aa
AA seq
DB search
MERNQTKMSREKSFLEFWRDNKGKRALVRRVKQLRASRLKRLLGSPEACEVLRNANMASL
LPPVGTEVFKRFTPASLEEINRRQAAKQQEAEQQKEEQKKHDNIEVSEEDLPQPASDLEA
GKPLPFIFGDPPPELLNIPLEELDPFYQSQKTFIVLSKGNIIYRFNAEPACYLLSPFNPL
RTFAIKILIHSLFSLFIMVTILTNCVFMTMSDPPAWSKTVEYVFTAIYTFEATIKILSRG
FCVGGFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIV
GALIQSVKKMGDVMILTVFCLAVFALIGLQLFMGNLRQKCVLMPPLNNHTSAEAINASFY
SNDTYNNSTYFDYYEHINNPENYYFLPGSPDALLCGNSSDSGACPDGYICLKAGRNPNYG
YTSYDTFSWAFLALFRLMTQDFWENLFQLTLRSAGKTYMIFFVVVIFLGSFYLINLILAV
VAMAYAEQNAATIAEAKQKEEEYAQILEVLKRREEELAANRAALLEKEGKNSEEEQMAMN
DFEEDQRPCPPCWYAFADIFLKWDCCGCWRWLKQLLYTIVMDPFVDLTITICIVLNTVFM
AMEHYPMTEEFEELLSIGNLVFTGIFTAEMVLKLLAMDPYNYFQVGWNIFDSIIVTMSLV
ELGLANVQGLSVLRSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFA
VVGMQLFGKSYKDCVCRISEDCXLPRWHMNDFFHAFLIIFRVLCGEWIETMWDCMEVAGQ
AMCLIVYMMVLVIGNLVVLNLFLALLLSSFSGDNLSASDDEGENNLQIAINRISRAVAWI
KAWFLKTFCNLLGKKTTKNSDPAAESTKEDDTTKEVLPLTFVTSEQPVTQVTVPSSNPTS
YYXNIVSLKVPIAKAESDADSSEDDDEEGVEQLSQGEESSVCSTVQKLPEKAEVQTENDD
SPEDCCTDKCYSRCPVLDIDTSQGRGKIWFNLRTTCFSIVEHNYFETFIIFMILLSSGAL
AFEDIYMEQRPVIKVILEYADQVFTYVFVLEMLLKWVAYGFKTYFTNAWCWLDFLIVDVS
LVSLTANILGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVMLVCM
IFWLIFSIMGVNLFAGKFYYCFNETAGERFPAEQVNNKTECFELIQNNFTEVRWKNAKIN
YDNVGMGYLSLLQVATFKGWMDIMYSAVDSRQVESQPMYEENLYMYLYFVCFIIFGSFFT
LNLFIGVIIDNFNQQKAKLGGTDLFMTEDQKKYYNAMKKLGSKKPQKPIPRPKNMFQGLV
FDLVTKQFFDIFIMVLICLNMVTMMVETDEQSEEKEAILYWINLVFIVIFTSECVLKIVA
LRQHYFAVGWNIFDFVVVILSIAGLLLADIIEKYFVSPTLFRVIRLARIGRILRLIRGAK
GIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKEGMIDDMFNFEDFGNSM
ICLFMITTSAGWDGLLVPIMNTPPDCDPDFENPGSAVKGNCGSPGVGIVFFTLYIIMSFL
VVVNMYIAIILENFNVATEESSDPLSEDDFEMFYETWEKFDPKASQFIHYSKLSELCDAL
QAPLRIPKPNIVKLIQMDLPLVPGDKIHCMDILLALTTEVLGESEAMDALKTNIEEKYMA
NNPSKKLYEPVISTLRTKQEEISASVIQRAYRRHLLRRAIKQASYTYREKTKGRRDGLSP
PETEGLICKQISRLYGDSETVSGVQREDCPVQVELQRELLLHAAPPPNDRTLKESVV
NT seq
5394 nt
NT seq
+upstream
nt +downstream
nt
atggagagaaatcaaacaaagatgagcagagaaaaatcgttcctggagttttggagggac
aacaaagggaaaagagctcttgtgaggagagtcaaacagctgagagcttcacgcctgaaa
cggttactgggcagtccagaagcctgcgaggttctccgcaatgccaatatggcttctctg
ctgccccctgttggtacagaggtgttcaaacgcttcacaccagcctctctagaagaaatc
aaccgaagacaagcagctaaacaacaagaagctgaacaacagaaggaagaacaaaagaaa
catgacaatattgaggtgtctgaggaagatctccctcaaccagccagtgatctcgaggct
gggaagccccttcccttcatttttggagacccacctcctgagttactcaacatccctttg
gaggagttggatcccttctaccaatcacagaagaccttcatcgtgctcagyaaaggaaac
atcatctacaggtttaacgcagagccggcgtgttacctgctcagtccattcaaccctctg
aggaccttcgccatcaagatcctcatccattctttgtttagtttgttcatcatggtgact
attttgaccaactgtgtgttcatgacgatgagtgatcctccagcatggagcaagacggtg
gaatacgtcttcacagccatctacacgtttgaagcaaccatcaaaattttgtcccgagga
ttctgtgtgggggggttcaccttcctcagagacccctggaactggctggacttcatggtc
atcagcatggcatatttgactgagtttgtggatttgggaaatgtttctgcactgaggacc
ttcagagttcttcgagccctgaaaactatcacagtaattcccggtttgaagaccattgtt
ggcgctctcatccaatcagtgaagaaaatgggtgacgtcatgattctgactgtgttctgc
ctcgccgtctttgctctgattggtcttcagcttttcatgggaaacctgagacaaaaatgt
gttctgatgccaccgctgaacaaccacacatcagcagaagccatcaatgccagtttctac
agcaacgacacctacaacaacagcacttactttgattactatgagcacattaacaatcca
gagaattattacttcctgccaggcagccctgatgctctgctgtgtggaaacagctctgat
tctggagcttgtccggatggttacatctgtctgaaagctgggaggaacccaaactatggc
tacaccagctatgacacttttagttgggcgtttctggctctgttcagactcatgacacag
gacttctgggaaaacctgttccaactgacgctgcgatcagcaggtaaaacctacatgatt
ttctttgtggtggttatcttcctcggttcattctacctcatcaacctcatcctggctgtg
gtggccatggcctacgccgagcagaatgcagccaccattgctgaagccaagcagaaggag
gaagagtatgctcagatcctggaggtgctgaagaggagagaagaggagctggcagccaac
agggcggcgctcttagagaaggaaggcaagaactctgaggaagaacaaatggccatgaat
gactttgaggaagaccaaagaccttgtcctccatgctggtatgcatttgctgacatcttc
ctgaagtgggactgctgtggttgttggaggtggctgaaacaactgctttacaccatcgtc
atggatccatttgtcgatcttactatcaccatctgcatcgttctcaacaccgtcttcatg
gccatggagcattacccaatgactgaggagtttgaggagctgctgagcattggaaacctg
gtctttacaggaatmtttacagctgagatggtcctcaagcttcttgcaatggatccatac
aactatttccaggttggctggaacatatttgacagcatcatcgttaccatgagcctggtc
gagctgggcctggctaatgtacagggtctgtctgtgcttcgctccttccgattgatgcga
gtgtttaaactggccaaatcgtggcccaccctcaacatgttgataaagattatcgggaac
tctgtgggggctctggggaacctgacgctggttctcgccatcatcgtctttatctttgct
gtcgtcggcatgcagctgtttgggaagagctacaaagactgygtctgccgcatttcagag
gactgcragcttcctcgctggcacatgaacgacttctttcacgccttcctcatcatcttc
agggtcctgtgcggcgagtggatcgagaccatgtgggactgcatggaggtcgcgggtcag
gctatgtgcctgatcgtctacatgatggtgctggttattggaaacctggtggtcctcaat
ctgttcctggccttgctgctgagctcgttcagcggagacaacctttcagcctcagacgat
gaaggagaaaacaatctgcagatcgccatcaaccggatcagcagggctgtggcctggatc
aaagcctggttcctcaaaaccttctgtaatctgctgggaaagaagacaacaaaaaactca
gaccctgcagctgaaagcactaaggaagacgacacgacgaaggaggttttacctctgacc
tttgtgacctcggagcagccagtaacacaagtcacagtccccagcagtaacccaaccagc
tactatcawaacatcgtatccctgaaggtccccatcgccaaggctgagtctgacgctgac
agttctgaagacgacgacgaggagggtgtggagcagctctcacaaggtgaagaatcgtct
gtctgcagcactgtgcagaaacttcctgaaaaggctgaagtccaaactgaaaatgatgat
tctcctgaggattgctgcactgataagtgttacagtcgctgcccagtcctggacatagac
acatcccagggcagaggaaagatctggtttaacctcaggacaacctgcttctccatcgta
gagcacaactactttgagacattcatcatcttcatgatcctgctgagcagtggagctctg
gcctttgaggacatctacatggagcagcggccggtcatcaaggtcatcctggagtacgca
gatcaggttttcacatacgtcttcgtgttggagatgcttctcaagtgggtcgcctacggg
tttaagacgtacttcaccaacgcctggtgctggctggacttcctcatcgtagatgtgtct
ctggtgtctttgacggcaaacatcctgggatactctgagctgggagccatcaagtctctc
aggactctgagagcgctgagacccctgagggccctgtctcgctttgagggcatgagggtg
gtggttaatgctctggttggagccataccctccatcttcaacgtcatgctggtgtgtatg
atcttctggctgatcttcagcatcatgggcgtgaacctgtttgcagggaagttttattac
tgcttcaacgagacagcaggggagaggttccccgctgagcaggtcaacaataagaccgag
tgcttcgagctgatacagaacaacttcactgaggtccgctggaagaatgccaagatcaac
tacgacaacgtggggatgggctacctgtcgctgctgcaagtggccacttttaaaggatgg
atggacatcatgtactcagcggtggactccagacaggtggagtcccagccgatgtacgag
gagaacctgtacatgtacctgtacttcgtttgcttcatcatcttcggctcgttcttcacc
ctcaacctcttcatcggcgtcatcatcgataacttcaaccagcagaaagctaagctcgga
ggaacggatctcttcatgactgaagatcagaagaaatactacaacgccatgaagaaactg
ggctccaagaagcctcaaaaaccaattcctcgaccgaagaacatgttccagggtctggtc
tttgacctggtgaccaaacagtttttcgacatcttcatcatggtgttgatctgcctcaac
atggtgacgatgatggtggaaacggacgagcagagcgaggagaaggaagccatcttgtac
tggatcaatctggtcttcatcgtcatcttcaccagcgagtgcgttctgaagatcgtggct
ctcaggcagcactacttcgctgtgggctggaacatcttcgacttcgtggtggtcatactg
tccatcgctggcctgcttcttgctgacatcatagagaaatattttgtctcgcccactctc
ttccgtgtgatccgattggctcggatcggtcggattcttcgtctcatccgtggagccaag
ggcatccgaacgctgctcttcgccttgatgatgtcacttcctgccctcttcaacatcggc
ctcctgctcttcctcatcatgttcatcttctccatctttgggatgtcgaacttcgcctac
gtgaagaaggaaggcatgattgacgacatgtttaattttgaggactttgggaacagcatg
atctgcctgttcatgatcaccacgtcggccgggtgggacggcctgctcgttcccatcatg
aacaccccaccggactgcgatccagactttgagaaccccggctcggccgtcaaaggaaac
tgcggcagccccggggtggggatcgtcttcttcaccctgtacatcatcatgtccttcctg
gtggtggtcaacatgtacatcgccatcatattggagaacttcaacgtggccacagaggag
agctcggaccccctgtccgaggatgacttcgaaatgttctatgagacctgggagaagttt
gaccccaaggcttcacagttcatacactacagtaagctgtcagaattatgtgacgctctg
caggctcctctgaggattcccaaacccaacatcgtcaagttgatccagatggatctgcct
ctggttccaggagacaagatccactgcatggacatcctgctggctctcactacagaggtt
ctgggtgagtccgaagcgatggatgctttaaagaccaacatcgaggagaagtacatggcc
aacaatccctccaagaaactgtacgaaccagtaatcagcaccctgaggacgaaacaggag
gagatttcagcctctgtgatccagagagcgtacaggaggcacctcctgcggcgggccatc
aaacaagcgtcctacacgtaccgagaaaagacgaagggacgcagagacgggctgtctcca
ccagagacagaaggacttatctgtaagcaaatcagtcggctgtacggagacagcgagacc
gtttctggtgtccagcgtgaggactgtcccgtccaggtggagcttcagagggagctcctc
ctycacgctgctcctcctccaaatgaccgcactctgaaggagtcggtcgtgtga
DBGET
integrated database retrieval system
