Poseidonibacter lekithochrous: ALEK_1709
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Entry
ALEK_1709 CDS
T06860
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alk
Poseidonibacter lekithochrous
Pathway
alk03030
DNA replication
alk03410
Base excision repair
alk03420
Nucleotide excision repair
alk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ALEK_1709 (ligA)
03410 Base excision repair
ALEK_1709 (ligA)
03420 Nucleotide excision repair
ALEK_1709 (ligA)
03430 Mismatch repair
ALEK_1709 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alk03032
]
ALEK_1709 (ligA)
03400 DNA repair and recombination proteins [BR:
alk03400
]
ALEK_1709 (ligA)
Enzymes [BR:
alk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ALEK_1709 (ligA)
DNA replication proteins [BR:
alk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ALEK_1709 (ligA)
DNA repair and recombination proteins [BR:
alk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ALEK_1709 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ALEK_1709 (ligA)
MMR (mismatch excision repair)
DNA ligase
ALEK_1709 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ALEK_1709 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
Nlig-Ia
HHH_5
DNA_ligase_ZBD
HHH
zf-C4pol
Motif
Other DBs
NCBI-ProteinID:
QKJ22977
LinkDB
All DBs
Position
complement(1800277..1802235)
Genome browser
AA seq
652 aa
AA seq
DB search
MTEIFSHEQYELEIQKMISWAHAYYVEDNPLATDEEYDQLSRACLAYEQTYPRNSHPNSP
NKRVGGYVLEGFEKASHLSRMWSQEDVFDTQELVDWINRAKKVHSDLEFMCEPKFDGASL
NLIYENGLLKQAITRGDGSIGEDVTNNVKTIHSIPLQIKEKGLLEIRGEIVIKKDDFEQI
NEQRLKDNEAAFANPRNAAAGSLRQLDPNITAKRKLFFNVWGVGENTLEFDRTSDMMQYI
YSLGFATPPLQTITTTVDGIEETYHKIIAARDSIEMMLDGMVVKINHIEVQEELGYTVKF
PRWSCAYKFPAVEKTTKIKDIIQQVGRTGVITPVAVVEPTHIEGSMVERASLHNYDEIER
LDLRINDEVIIIKSGDIIPKITKVFTDRRDGSQKEVARPTQCPECQSELLDEGTLIKCQN
LDCPSIVTNSIIYFASKNCMNIDGLGIKIVEQLVKEKKIYDILDLYSLKYEDMQDMEGFK
EKKISNLLNAIANTKGTALHRVINALGIEHIGEVASKQICLEFGLNVINIDLDSLIALDG
IGEQMAKSFVEFMRVNNALVLKLIDFIDPEVEVRVEVEENAFKDTTVVLTGTMTKSRGII
KKDLEALGAKVSSSVSKKTDYLIYGEDAGSKYDKAVTLGVKTLTQSEMEAMI
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaattttttcacatgaacaatatgaattagaaatacaaaaaatgatatcttgg
gcacatgcctattacgttgaagacaacccactagctactgacgaagagtacgaccaactt
tcacgagcttgtttagcttatgaacaaacttacccacgaaattctcatccaaattctcct
aataaaagagtgggaggatatgtattagaaggcttcgagaaagcttcgcatttatctaga
atgtggtcacaagaagatgtatttgatacacaagagttagttgattggattaatagggca
aaaaaagtacatagtgatttagaatttatgtgtgaaccaaaatttgatggggcatcttta
aatcttatatatgaaaatggacttttaaaacaagcaattacaagaggtgatggaagtatt
ggagaagacgttactaataatgtaaaaacaatccactctattccacttcaaataaaagaa
aaaggtcttttagaaattagaggagaaatagttatcaaaaaagatgactttgaacaaata
aatgaacaaagacttaaagataatgaagcagcttttgcaaaccctagaaatgcagctgct
ggaagtttaagacaactagacccaaatattacagctaagcgaaaactattttttaatgta
tggggagttggagaaaatactttagagtttgatagaacatctgacatgatgcaatatatt
tactcacttggatttgcaactccaccacttcaaacaatcactacaacagttgatggaatt
gaagaaacatatcacaaaattattgcggcaagagactctattgaaatgatgcttgatggt
atggttgtaaaaatcaatcatattgaagtacaagaagagcttggatatacagtaaaattc
cctagatggtcttgtgcttataaattcccagcagttgaaaaaactacaaagataaaagat
attatccaacaagttggacgaactggtgttattactccagtagctgtggttgagcctact
catattgaaggaagtatggttgagagagcaagtttacataactatgatgaaattgaaaga
ttagatttaagaatcaatgatgaagtaattatcataaaatctggtgatattattccaaaa
atcactaaagtatttacagatagacgagatggatctcaaaaagaagtagctagaccaaca
caatgtccagaatgtcaaagtgaacttttagatgaaggtacactaattaaatgtcaaaac
ttagattgtccaagtattgtaacaaactcaataatttattttgcatctaaaaactgtatg
aatattgatggtttaggtattaaaatagttgagcagttagtaaaagaaaaaaagatatat
gatattctagatttatactctttaaaatatgaagatatgcaagatatggaaggttttaaa
gagaagaaaatctcaaacttacttaatgcaatagcaaatacaaaaggtactgcacttcat
agagttataaatgctttaggaattgaacatattggagaagtagcttccaaacaaatctgt
ttagaatttggactaaatgtaatcaatattgatttagattcacttattgcattagatgga
attggtgaacaaatggctaaatcctttgtagagtttatgagagttaataatgctcttgta
ttaaaacttattgactttattgatccagaagttgaagtaagagttgaagtagaagaaaat
gcatttaaagatacaactgtagttttaacaggaactatgactaaaagtagaggtattatc
aaaaaagacttagaagcacttggagcaaaagtaagctcatctgtttctaaaaaaactgat
tatctaatctatggagaagatgcaggaagtaaatatgataaggctgtaacacttggagtt
aaaactctaacacaaagtgaaatggaagcaatgatttaa
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