Alkalihalobacillus sp. AL-G: MOJ78_02170
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Entry
MOJ78_02170 CDS
T09526
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alkg
Alkalihalobacillus sp. AL-G
Pathway
alkg03030
DNA replication
alkg03410
Base excision repair
alkg03420
Nucleotide excision repair
alkg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alkg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MOJ78_02170 (ligA)
03410 Base excision repair
MOJ78_02170 (ligA)
03420 Nucleotide excision repair
MOJ78_02170 (ligA)
03430 Mismatch repair
MOJ78_02170 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alkg03032
]
MOJ78_02170 (ligA)
03400 DNA repair and recombination proteins [BR:
alkg03400
]
MOJ78_02170 (ligA)
Enzymes [BR:
alkg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MOJ78_02170 (ligA)
DNA replication proteins [BR:
alkg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MOJ78_02170 (ligA)
DNA repair and recombination proteins [BR:
alkg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MOJ78_02170 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MOJ78_02170 (ligA)
MMR (mismatch excision repair)
DNA ligase
MOJ78_02170 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MOJ78_02170 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
RNA_pol_A_CTD
Nlig-Ia
Zn_ribbon_NUD
HHH
BRCT_2
DUF4796_N
zf-IS66
Motif
Other DBs
NCBI-ProteinID:
WLD93746
LinkDB
All DBs
Position
416946..418952
Genome browser
AA seq
668 aa
AA seq
DB search
MSEEQVKTQIEELKTLLNQYNYQYHVLDKPSVPDAEYDQKLHELIKLEQEYPHLRTEDSP
TQRVGGEPLEGFEKVEHRTPMLSLGNAFDDQDLRDFDRRVRQGVGGDVHYVCELKIDGLA
VSLLYEEGRFVRGATRGDGRIGENITNNLKTIRSIPLRLKENATLEVRGEAFMPKASFEK
LNADREEEGVEQFANPRNAAAGSLRQLDPKIAASRNLDIFVYGAGQYEGRSIDSHSESLN
YMSELGFKTNQEWKRCTSIEEVIEYVNGWVERRPDLNYEIDGIVIKVDSLDQQDELGTTV
KSPRWAIASKFPAEEVITQLEGIELSVGRTGVVTPTALLKAVQVAGTTVKRASLHNEDLI
RERDLKIGDYVVIKKAGDIIPEVVNVIEEKRTGDEQDFSMPENCPECGSELVRIEDEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVITQLFNENLIQDVADIYELDRNELLKL
ERMGEKSVDNLLSAIEASKQNSLERLLFGLGIRHVGSKAARTLAENFETIERLQNAESGD
LTAINEIGEKMADSVVLYFEKPEVEQLVKHLREVGVNMEYKGLKRSEVEDVDSPFNGKTI
VLTGKLQQLSRNEAKAEIERLGGKVTGSVSKSTDLLIVGEDAGSKLTKAEKLGIEVWTED
AFVAELET
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggagcaagttaagacccaaatcgaagaactgaagacattattgaaccagtac
aattatcaatatcatgtactcgataaaccgtccgtgcctgatgcagaatacgatcaaaag
ctgcatgagctgattaagcttgaacaagagtacccacacttaaggacggaagactctccg
acgcagcgtgttggcggagaaccgctcgaaggctttgaaaaggttgagcaccgcacaccg
atgctcagtctcggcaatgcgttcgatgatcaggatcttcgtgatttcgaccgtcgggtt
cgccaaggtgtcggcggtgatgttcattatgtctgtgagttgaaaatcgatggtcttgcg
gtttcccttttatatgaggagggccgatttgttcgtggtgcaacccgcggtgacggtaga
atcggtgaaaacataacgaataatttaaagacaattcgctccatcccattacggctaaaa
gaaaatgcgacgctcgaggtacgaggcgaagcgtttatgccgaaagcctcttttgaaaag
ttgaacgcagatcgggaagaagagggtgtcgagcagtttgcgaaccctcgtaacgcagca
gcaggctcgctccgccagcttgatccgaaaatagctgcgagtcgtaaccttgatattttt
gtctatggagcagggcagtacgaaggtcgcagcatcgattctcatagtgaaagcctcaac
tacatgagcgagcttggttttaaaacaaaccaagagtggaaacgctgtacctcgattgaa
gaagtgatcgaatacgtgaacggctgggttgaaagacgcccagatctgaactatgaaatc
gacggaatcgtcataaaagttgattcattagatcaacaggatgaacttggaacgacggtg
aaaagtccgcgctgggccatcgcctccaagtttccggccgaagaggtcatcacacagctt
gagggaatcgaattgagtgtcggacgcaccggagtcgtaacacctacagcccttttaaaa
gccgtgcaggtcgctggaacaacggtgaagcgtgcctcgcttcataatgaagatctcatt
cgtgaaagagacctcaagatcggcgactatgttgtgattaaaaaggctggagatattatc
ccagaagtagtcaatgtgatcgaagaaaagcgcacaggggatgagcaggattttagcatg
cctgaaaattgcccagaatgtggcagtgaactcgtacggattgaagacgaggtggcgtta
cgctgtattaacccgaaatgcccggctcaaattcgcgaaggcttgattcattttgtgtcc
agaaacgcgatgaatattgatgggctcggtgaaaaagtgatcacgcagctttttaacgaa
aacctgattcaggatgtagcggacatttatgagctcgaccgaaatgagctgttgaagctc
gagcgaatgggtgaaaagtctgttgataatcttttgagtgcaatcgaagcctcgaaacag
aattcgttggaacgtcttttattcggtctcggcattcgtcacgtaggctcaaaagcagcg
cgtaccctagctgagaactttgaaacgatagaacgattgcagaacgcagaatctggggac
ttaacggcgatcaatgaaatcggtgagaagatggcggattccgtcgttctctattttgaa
aaaccagaagttgaacagctcgtgaagcaccttcgtgaagtgggtgtgaacatggaatat
aaagggttgaaacgtagtgaagtggaagatgtcgactctccgtttaatggaaagacgatc
gtgttgactggtaagttgcagcaactgtctcgtaatgaagcgaaagccgaaattgaacga
ctcggcggaaaagtaacagggagtgtgagcaaaagcacagacctgttgattgttggtgaa
gatgcgggatcaaagcttacgaaagcggaaaagctgggaatcgaagtctggactgaagac
gcatttgttgcagagctagaaacttaa
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integrated database retrieval system
