Alkalihalobacillus sp. LMS39: MM271_02155
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Entry
MM271_02155 CDS
T09200
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alkl
Alkalihalobacillus sp. LMS39
Pathway
alkl03030
DNA replication
alkl03410
Base excision repair
alkl03420
Nucleotide excision repair
alkl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alkl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MM271_02155 (ligA)
03410 Base excision repair
MM271_02155 (ligA)
03420 Nucleotide excision repair
MM271_02155 (ligA)
03430 Mismatch repair
MM271_02155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alkl03032
]
MM271_02155 (ligA)
03400 DNA repair and recombination proteins [BR:
alkl03400
]
MM271_02155 (ligA)
Enzymes [BR:
alkl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MM271_02155 (ligA)
DNA replication proteins [BR:
alkl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MM271_02155 (ligA)
DNA repair and recombination proteins [BR:
alkl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MM271_02155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MM271_02155 (ligA)
MMR (mismatch excision repair)
DNA ligase
MM271_02155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MM271_02155 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_pol_A_CTD
zf-NADH-PPase
BRCT_2
Metalloenzyme
zf-IS66
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
UOE94495
LinkDB
All DBs
Position
416945..418963
Genome browser
AA seq
672 aa
AA seq
DB search
MEKTAAQQQITKLRALLEDYGYHYYVLDQPKVSDAEYDSLMQELVELEQQFPELQTEDSP
SVRIGGEPLPHFVKVEHEVPMLSLGNAFNEQDLRDFDRRVRQGIDGEPTYSCELKIDGLA
VSLLYREGRLVRGATRGDGTVGEDITQNLRTIGSIPLRLKEAVDIEIRGEAFMPKRSFEA
LNKAKEEAGEEKFANPRNAAAGSLRQLDPKIAAKRNLDIFLYGIGLLQGKELVSHHEGLA
YLKALGFKVNEQNRYCKSIDEVIAYISEWVEKRASLPYEIDGIVIKVDELAHQKELGFTA
KSPRWAVAYKFPAEEVMTKLIGIELTVGRTGAITPTALLEPVTVAGTTVKRASLHNEDLI
REKDIKIGDSVIVKKAGDIIPEVVNVLPELRTGEEVDFQMPTHCPECGSELVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGERVIAQLFAHELVKDVADLYKLNRDELLQL
ERMGEKSVDNLLQAIEATKQNSLERLLFGLGIRFVGAKAAKTLAMHFESMEKLQQASFEE
LVAVHEIGDKMAASVVRYFENEEVVELLAELRRLGVNMAYNGPKLVVQEQSENNPFSGKT
IVLTGKLEQLSRNEAKEKIELLGGKVTGSVSKKTDFLIAGEDAGSKLEKAEQLDIPVWDE
NRLVDELAALEK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaacggcagcacaacaacaaatcacaaaattacgagcattacttgaggactat
ggttatcattattatgtcttagatcaacctaaagtgtcagacgcagaatatgattcactc
atgcaagagcttgtagaacttgaacaacagtttccagagctacaaacggaagattctccg
tctgttcgcatagggggggaacctctgcctcattttgtaaaagtagagcatgaagttccg
atgcttagcttaggaaatgcttttaatgagcaagatttacgtgactttgatcgtcgtgtt
cgtcaaggaattgacggtgagccaacgtatagctgtgaattaaaaattgatggtttggct
gtttctttactttatcgagaaggtcgacttgttcgtggagcaactcgtggagacggtact
gtcggtgaagatataacgcaaaaccttcgtacgatcggatcaattccgcttcgtttaaag
gaagccgttgatatcgaaatacgaggagaagcctttatgccaaaacgctcgtttgaagct
ttaaacaaggcaaaagaggaagcgggtgaagaaaagtttgccaatcctcgaaatgcagct
gcgggctcactccgacaactggatccgaaaattgcagcaaaacgaaatttagacattttt
ttatatggaattggcctacttcaaggcaaagagcttgtctcccatcatgaaggattagcg
tatttaaaagcgcttggttttaaagtaaatgaacaaaaccgttattgtaaatcgatcgat
gaagtaattgcctatattagtgaatgggtagaaaaaagggcatcattgccatatgaaatt
gatggcattgtcattaaagtcgatgagttagctcatcaaaaagagttaggatttactgcg
aaaagtcctagatgggcggtagcttataagtttccagcagaagaagtcatgacaaagctg
attggaattgaactgactgttggacgaacaggagcaattacaccaaccgcattacttgag
cctgttactgtagcgggaacaacggtcaaacgtgcttctttgcataatgaagatttaatt
cgtgaaaaagatattaaaattggcgactctgttattgtaaaaaaagcaggagatattatt
ccagaagtcgtcaatgttttaccagagctacggactggagaagaagtagattttcaaatg
ccaacacattgtccagaatgtggaagtgaacttgttcggttagaaggagaagtcgctctt
cggtgtatcaatccaaaatgcccagcgcaaatccgggaagggttgattcactttgtttcg
agaaatgcgatgaatattgacggtttaggtgaacgagtcatcgcgcaattgttcgctcat
gaattagtgaaagatgtcgctgatttatataaattaaatcgagatgagcttcttcaatta
gaacgaatgggtgaaaagtcagttgataatttattacaagcgatagaagcgacaaaacaa
aattctctcgaacgattattgtttggactaggcattcggtttgttggtgcgaaagcggca
aaaactttagcaatgcattttgaatcgatggaaaaacttcagcaagcatcatttgaagaa
ttagttgcggttcatgaaattggcgataaaatggcggcgtcagttgtccgctattttgaa
aatgaagaagtagtagaattacttgcagagcttcgcaggcttggtgtcaatatggcatat
aacggtccgaaacttgtcgtacaagaacaaagtgaaaacaatccgttttcaggaaaaact
attgtactgacaggcaagctagaacagttatcgcgaaatgaagcaaaagaaaaaatcgag
ttattaggtgggaaagtgacgggaagtgtcagtaaaaagacagactttctcattgccggt
gaagatgcagggtcaaagttagaaaaagcggagcagttagacattccggtttgggacgaa
aaccgccttgttgatgagttagcagcgttagaaaagtaa
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