Xiashengella succiniciproducens: M9189_07030
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Entry
M9189_07030 CDS
T08178
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alkq
Xiashengella succiniciproducens
Pathway
alkq03030
DNA replication
alkq03410
Base excision repair
alkq03420
Nucleotide excision repair
alkq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alkq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9189_07030 (ligA)
03410 Base excision repair
M9189_07030 (ligA)
03420 Nucleotide excision repair
M9189_07030 (ligA)
03430 Mismatch repair
M9189_07030 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alkq03032
]
M9189_07030 (ligA)
03400 DNA repair and recombination proteins [BR:
alkq03400
]
M9189_07030 (ligA)
Enzymes [BR:
alkq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M9189_07030 (ligA)
DNA replication proteins [BR:
alkq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M9189_07030 (ligA)
DNA repair and recombination proteins [BR:
alkq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M9189_07030 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M9189_07030 (ligA)
MMR (mismatch excision repair)
DNA ligase
M9189_07030 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9189_07030 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
RNA_pol_A_CTD
TF_Zn_Ribbon
RNA_lig_T4_1
zf-tcix
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
URW78616
UniProt:
A0A9J6ZMX0
LinkDB
All DBs
Position
complement(1661206..1663209)
Genome browser
AA seq
667 aa
AA seq
DB search
MDKQSAEAAIKSLRDELHHHNILYYVKNSPEISDYEYDQKMTELIRLEALYPEFYDSNSP
SVRVGSDLSQEFKQVRHKYPMLSLGNSYSIGELRDFVERVYRLAGTRPAFVCELKFDGTA
ISLSYENGLLASGVTRGDGEVGDDITQNIKTLRSIPLRLIGNYPAQLEVRGEIYMPRKGF
EELNRMREEIGEQPFANPRNAAAGSLKLQNSAQVAKRPLECFLYQFISDDLPYQTHAELL
KAASEWGLRVSPHYVRCTSFEEIEAYITHWDTERRKLPFDIDGVVIKVDDMQLREELGFT
AKSPRWAIAYKFKPEAAYTRLNSVDFQVGRTGVVTPVANLDPVLLAGTTVKRASLHNADI
IESLDLHIGDMVSVEKGGEIIPKITGVDKSKRTEEHEKVRFITACPECGTPLVREEGEAA
HICPNRASCPPQIKGRIEHFISRQAMDISGLGSETIALLYDKGLIKNVADLYRLKESDIA
PLEGLGERSAANIISGIEASKQIPFSRVLFALGIRFVGETVAKKLASSLRSMDRIMNASF
EELLAVDEIGQKIAASIKAYFADEANVRLVEDLRFFGLKMEEVESGNIAVSDTLNGLSFV
VSGVFSISRDELKGLIEAHGGKNLSSVTGKTDYLVAGDNMGPAKLEKAQKLGVKIISEQD
FMKMIGK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggataagcaaagtgctgaggctgcaataaagagtctaagggatgagttacatcatcac
aacatcctttactatgtaaaaaacagccctgaaatctctgattatgagtatgaccagaag
atgacggagcttatccgtttggaggcactttatcccgaattctatgattcaaacagtcca
tcagtaagggttggtagtgatctcagtcaggagtttaagcaggttcgccacaaatacccc
atgctttcccttggaaacagttattccataggtgaactacgcgattttgtagagcgggtg
tatcgtcttgcaggaactcgtccggcctttgtctgtgaacttaaatttgacggtaccgct
atttccctgtcatacgaaaatggattactagcctctggagtaacacgaggagacggagag
gttggtgatgacattacacagaacatcaagacacttagaagtataccactcagacttata
gggaattatcctgcccaacttgaagtaaggggtgagatttatatgccccgaaagggtttt
gaagaactcaacaggatgcgcgaggagattggagaacaaccctttgcaaatcctcgcaat
gccgcagcaggatcactgaagttgcaaaatagtgcccaggtagccaaacgcccccttgaa
tgcttcctctatcagtttattagtgatgatttaccctatcagacccatgctgaactgctg
aaagcagcatctgaatggggactcagggtatcaccccactatgttagatgtaccagcttt
gaagaaattgaagcttatatcacacattgggacactgaacgcagaaagctccccttcgat
attgacggggttgtaatcaaggttgatgacatgcagttgcgcgaggaactgggttttaca
gcaaagagtccccgctgggcaatcgcatataagtttaagcccgaagcggcctatacaagg
cttaattcggtcgattttcaggttggtcgcactggtgttgtaactccggtagctaatctg
gatcctgtattacttgcgggaacaactgtaaaacgtgcatcactgcataatgcagacata
attgaatcgcttgacctgcatatcggagacatggtatcagttgaaaagggaggcgagata
attcctaagataactggtgttgataaaagcaagcgcacagaagaacatgaaaaagtaagg
tttataaccgcttgtcctgaatgcggtaccccacttgtccgagaggaaggtgaagctgca
catatatgtcccaaccgtgcctcctgtccaccgcagatcaagggccgaatagagcatttc
ataagccgtcaggccatggatatctcaggactgggtagtgaaacaatagctctactgtac
gataagggactaattaagaacgtagccgacctatatcggttaaaggaatctgacatagca
ccactggaaggacttggtgaaaggtccgcagccaatattataagtggtatagaggcatca
aagcagatacctttctcaagggtattatttgcacttggcattcgttttgttggtgagaca
gtcgccaagaagcttgcttcttccctgcgttccatggacagaattatgaatgcttcattt
gaggaacttctggctgtggacgaaataggacagaaaatagctgcaagcataaaagcttat
tttgcagatgaagctaatgtccggcttgttgaagatctgagatttttcggccttaaaatg
gaggaagtggaaagtggtaacatcgcagtgtcggatacacttaacggacttagctttgtg
gttagtggggtgttttcaatatcgcgcgatgagctaaaaggcctgatagaggcccacgga
ggcaagaacctgtcctcagttaccggaaaaacagactatctggttgccggtgacaacatg
ggacccgcaaaacttgaaaaagcacagaaacttggggtaaagattatttcggaacaggac
tttatgaaaatgatcggtaaataa
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