KEGG   Algoriphagus sanaruensis: AO498_07390
Entry
AO498_07390       CDS       T04334                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
alm  Algoriphagus sanaruensis
Pathway
alm03030  DNA replication
alm03410  Base excision repair
alm03420  Nucleotide excision repair
alm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:alm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AO498_07390
   03410 Base excision repair
    AO498_07390
   03420 Nucleotide excision repair
    AO498_07390
   03430 Mismatch repair
    AO498_07390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:alm03032]
    AO498_07390
   03400 DNA repair and recombination proteins [BR:alm03400]
    AO498_07390
Enzymes [BR:alm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AO498_07390
DNA replication proteins [BR:alm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AO498_07390
DNA repair and recombination proteins [BR:alm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AO498_07390
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AO498_07390
   MMR (mismatch excision repair)
    DNA ligase
     AO498_07390
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AO498_07390
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 Nlig-Ia 5_3_exonuc Auto_anti-p27 HHH PTCB-BRCT
Other DBs
NCBI-ProteinID: AMQ56235
UniProt: A0A142EM80
LinkDB
Position
complement(1661278..1663734)
AA seq 818 aa
MTHAEAAKRIAQLTKEINYHNQLYYQESRTEISDFDFDRLLEELIQLETSFPDLLSPESP
SQRVGGSITKEFQTVEHEYRMLSLGNTYTVEELQAFDERVIKGLGHQNFEYFCEMKFDGV
AISLVYENGKLVRAVTRGDGTKGDDVTANVKTIRNIPLAIHAANVPAKFEVRGEIFLPLK
EFEKINAEREQKGESLLANPRNAASGTLKMQDSSVVAKRRLNCYFYQLLGEDLGISKHDE
AIHLIESWGFNVSPTYRKASTIQEVLNYIEDWREQRFTLPLDTDGVVLKINDYDQREELG
FTAKNPRWAIAYKYKAESAETELLSITYQVGRTGAITPVANLAPVQLAGTTVKRASLHNA
NEILRLDIHERDFVFVEKGGEIIPKITGVNPVKRKIGAHPVHYIEHCPECGTGLIRKEGE
AKHYCPNAQSCPPQVLGKIEHFVHKRAMDIDSLGTERIRALIDQGFISSYADIYDLENKQ
QDLLGLEMSQDQYEREVSGLLYIRLDKALFALTEGISYKQIQDYLTETAHLPLRDQLRGF
QAQIRAWKKKVPANVGMIDYLLQNLDQHLELMKVEDYVPVAVVLEIFLGRRTSFEQILEA
SKKHGTVHMILLELNLDLPVEIQERIKKLKANTFQEGVISNMMEGIFKSKEQPFEKVLFA
LGIRNIGENTAVLLAKHFGSIDKLKDASDEQLLEINGVGETLVHSIREFFAQSENLEHIA
RLKAHGLKFEIEHREEQVLGNALAGKRILASGKLQNFKRDEIVGFVQAHGGQYISSVSKN
LDFIIEGEEMGPSKKEKAIKLGIPLISEEDFLKMIQSN
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgacacacgctgaagctgcgaaacgaattgcccaattgaccaaagaaatcaattaccac
aaccaattgtattatcaagagagccggactgaaatttcggactttgactttgatcgtttg
cttgaggaattgattcaattggagaccagttttccggatttgctttctccagaaagtcct
agtcagcgagttgggggttcgatcaccaaggaatttcagacagtggagcatgaataccga
atgctatcacttggaaacacgtatactgtggaagaactccaggcttttgacgagcgtgtg
atcaaaggtcttggccatcaaaacttcgagtacttctgcgaaatgaaatttgacggtgtg
gcaatctccttggtgtatgaaaacggcaagctagtccgtgcggtgacccgaggcgacgga
accaaaggagacgatgtgactgcgaatgtaaagacaattcgaaacatccctttggcaatc
catgcggcgaatgtccctgccaaatttgaagtgagaggggagatttttcttccactcaag
gaatttgaaaaaatcaatgccgaacgtgagcaaaaaggcgaatctcttctagctaatcca
agaaatgccgcctcaggtacactcaaaatgcaggacagcagtgttgtcgccaagcgaaga
ctcaactgctatttttaccagcttttgggtgaagatctgggaatatccaaacacgatgaa
gcgatccacttgatcgaaagctggggcttcaatgtctcccctacctatcgaaaagcatct
accattcaagaagtcttgaattatatcgaggattggagagaacaaagattcacccttcct
cttgataccgatggcgtggtcctcaaaatcaacgattacgatcaacgggaagaattggga
ttcacagccaaaaatcccagatgggccatcgcatacaaatacaaggcggaaagcgccgaa
accgagctcctttccatcacctatcaagtgggccgtactggtgcgattaccccagtagct
aatctagctccagttcagttggctggtacaactgtcaaaagagcgtcccttcacaacgcc
aacgaaattctacggctcgatatccatgagcgggattttgtttttgtggagaaaggcggg
gaaatcatcccaaaaatcaccggagtaaatccagttaagcgaaaaataggagcacatcct
gtccattatatcgaacattgtccggaatgtggaactggacttatccgaaaagaaggggaa
gcaaaacactattgtccgaatgcccagagctgccctcctcaggtcttggggaaaatcgag
cattttgtccataagcgagcgatggatattgattcattgggcacggagcggattcgtgct
ttgatcgatcaagggtttatcagcagctacgccgatatctacgatttggaaaacaagcag
caagatttgcttggcctggaaatgagccaagatcaatacgaacgggaagtttctggactg
ctatatatccgattggacaaggctttattcgcccttaccgagggaatttcatataagcaa
attcaggattatttaaccgaaacggcccatctccccctccgagatcagcttcgaggtttt
caagctcagatcagagcttggaagaaaaaagttcctgccaatgttggaatgatcgactac
ctccttcaaaatctagatcaacacctagagttgatgaaggtggaagactatgtcccagtg
gctgtagtcttggaaatttttctgggaaggagaaccagctttgagcaaatccttgaggcg
agtaaaaagcacggcacggtccatatgattctcctcgaactcaatctggaccttcctgta
gaaattcaggaaagaatcaaaaaactcaaggccaacaccttccaagaaggtgtcatttcc
aacatgatggagggaattttcaaatccaaggaacaaccttttgaaaaggtgcttttcgct
ttgggtattcgaaatatcggtgaaaatacagcagtgcttttagcgaagcactttggaagc
attgacaaattaaaagatgccagcgacgaacaacttttggaaatcaatggagtaggcgaa
acgctggttcacagcatcagggagtttttcgcacaatcagaaaacctcgaacacattgct
cggctgaaggctcatggattaaaatttgaaatcgagcatcgagaggaacaagtattagga
aatgccttggctggaaagcggattttagcttctggaaaattgcaaaatttcaagcgggat
gaaatcgtgggtttcgttcaggctcatggaggtcaatatatttcttcagtttccaaaaat
ctggacttcattattgaaggagaagaaatgggacctagcaagaaagaaaaagccattaaa
ctgggcattccactaatatcagaggaagattttttaaaaatgatccaaagcaactaa

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