Pseudoprevotella muciniphila: C7Y71_002800
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Entry
C7Y71_002800 CDS
T06230
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alq
Pseudoprevotella muciniphila
Pathway
alq03030
DNA replication
alq03410
Base excision repair
alq03420
Nucleotide excision repair
alq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C7Y71_002800 (ligA)
03410 Base excision repair
C7Y71_002800 (ligA)
03420 Nucleotide excision repair
C7Y71_002800 (ligA)
03430 Mismatch repair
C7Y71_002800 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alq03032
]
C7Y71_002800 (ligA)
03400 DNA repair and recombination proteins [BR:
alq03400
]
C7Y71_002800 (ligA)
Enzymes [BR:
alq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C7Y71_002800 (ligA)
DNA replication proteins [BR:
alq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C7Y71_002800 (ligA)
DNA repair and recombination proteins [BR:
alq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C7Y71_002800 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C7Y71_002800 (ligA)
MMR (mismatch excision repair)
DNA ligase
C7Y71_002800 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C7Y71_002800 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
BRCT_2
Auto_anti-p27
HHH_3
zf-tcix
zf-NADH-PPase
UPF0758_N
HHH_8
Motif
Other DBs
NCBI-ProteinID:
QFQ13681
UniProt:
A0A5P8E9J4
LinkDB
All DBs
Position
664483..666489
Genome browser
AA seq
668 aa
AA seq
DB search
MNDTERILYLRSELHRHNYNYYVKNSPEISDMEFDGLMRELQDLEAAHPEMYDANSPSVR
VGSDISNDFKQIVHAYPMLSLGNTYDRDEVRDFYNRVKSGLDGEDFEICCELKFDGLSIS
LIYEDGRLAHAVTRGDGVKGDDVTANVRTIKSIPLVLAPDGNYPSHFEIRGEVLMPWESF
EDLNRKRELREEALFANPRNAASGTLKSKNSSVVAERHLDAYLYYLLGDDIPTDSHYDNL
QRAKSWGFKVSDATSLARTLDDIYKYIDYWDVERRNLPVATDGIVLKVNDIRQQERLGYT
AKTPRWAIAYKFKAERACTRLNEVTFQVGRTGAVTPVANMDPVQLAGTIVKRASLHNEDI
IKQLDLYIGDMVYVEKAGEIIPQIVGVNFDERSLLLGEKVEFIKHCPECGTPLVRYEGEA
AHYCPNDSSCPPQIKGRIEHYISREAMNIDSLGPETVDAYFEQGLLKDVSDLYRIKITDI
CGYDRSREKSARKIINAIEASKEVPFDRVLYALGIRFVGRVAARQIAQHFRSMERLKTAS
AEDLLEVEGIGAVIANSIVSFLSNSNNAALIDRLAEAGVKMELPETVKASDKLAGKSIVI
SGTFARHSREEYKSIIEQHGGKNVSSISKKTSFVFAGDNMGPSKLEKANKLGIPIVNEEE
FLSMIGEA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatactgaacggatattatatttgcggagcgagttgcaccggcacaactacaac
tattacgtcaagaacagccctgagatcagcgacatggaatttgacgggctgatgcgtgag
ttgcaggatcttgaagcggctcatcctgagatgtacgacgccaattctccctccgtgaga
gtaggcagtgacatcagcaatgacttcaaacagattgttcatgcttaccccatgctttcg
ctgggcaacacctacgacagagacgaagtccgcgatttctacaaccgcgtgaagtcaggt
ctcgacggtgaggattttgagatttgctgcgagttgaaatttgacggtcttagcatatcg
ctcatctacgaagacggccggcttgcccacgctgttacacgcggtgacggcgtgaaaggc
gatgatgttacagccaatgtgcgtaccatcaagtctattcccttagttcttgccccagat
ggcaattatccttcacatttcgagatacgcggcgaggtactcatgccgtgggagagtttt
gaagatctcaaccgcaagcgcgaacttcgcgaggaagccctttttgccaacccgcgcaat
gctgcctcgggcactctgaagagcaagaattcgagtgttgttgcagagcgccatttagac
gcatatctctactatcttctcggcgatgacattcctacggacagtcattacgacaacttg
cagcgcgccaaatcgtggggcttcaaggtatcggacgcaacgagtcttgcccgtacactt
gacgacatctacaaatacatcgactactgggacgttgagcgcagaaatcttcctgttgct
accgacggcatcgtgctgaaggtaaacgacatccgtcaacaggagagattgggttacaca
gccaagacaccacgctgggcaatagcctacaagttcaaggcagagagggcttgcacccgt
ctgaacgaggttacgttccaggtggggcgtactggcgctgtcacacccgttgccaacatg
gatccggtgcagttggcaggcactatcgtgaaacgtgcttcgctccataatgaggacatc
atcaagcaactcgacctctacatcggcgacatggtttatgtggaaaaagccggcgagatt
attccgcagatagttggtgtaaactttgatgagcgcagcctgctgctgggtgagaaagtg
gaatttatcaagcactgccccgagtgcggtactccgcttgtgcgctacgaaggtgaagcg
gcgcactattgccccaacgacagcagttgtccaccacagattaaggggcgcatagaacac
tacatcagccgtgaggcgatgaacatagactctttaggacctgagacggtggatgcttat
ttcgagcagggactcttgaaggacgtatcggacctgtacaggataaaaatcacggacatc
tgcggttacgacaggagcagagagaaatcggcaagaaaaatcatcaatgccatagaagcc
agtaaggaagtgcctttcgacagggtgctgtatgcccttggcatcaggttcgtgggcaga
gtggcagcccgccagatagcacagcatttccgttcgatggaaaggcttaagactgccagc
gcggaagatttgcttgaggtggaaggtattggcgcagtaattgccaacagtatcgtttct
ttcctgagcaattcgaacaatgcggcacttatcgaccgtctggcagaagccggtgtgaag
atggaactgcccgaaacggtcaaggcttccgacaaacttgcaggcaaaagcatcgttatc
agcggcacctttgcccgccacagtcgcgaggaatataaatccatcatcgaacagcacggc
ggcaaaaacgtgagcagtatctcgaagaagacctccttcgtctttgccggcgacaacatg
gggccatcaaaactcgagaaagccaacaaactcggcattcccatcgtcaacgaggaggag
ttcctgtcgatgataggcgaagcgtaa
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