Altererythrobacter sp. N1: LBX01_10900
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Entry
LBX01_10900 CDS
T10199
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
altn Altererythrobacter sp. N1
Pathway
altn03030
DNA replication
altn03410
Base excision repair
altn03420
Nucleotide excision repair
altn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
altn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBX01_10900 (ligA)
03410 Base excision repair
LBX01_10900 (ligA)
03420 Nucleotide excision repair
LBX01_10900 (ligA)
03430 Mismatch repair
LBX01_10900 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
altn03032
]
LBX01_10900 (ligA)
03400 DNA repair and recombination proteins [BR:
altn03400
]
LBX01_10900 (ligA)
Enzymes [BR:
altn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LBX01_10900 (ligA)
DNA replication proteins [BR:
altn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LBX01_10900 (ligA)
DNA repair and recombination proteins [BR:
altn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LBX01_10900 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBX01_10900 (ligA)
MMR (mismatch excision repair)
DNA ligase
LBX01_10900 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LBX01_10900 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Nlig-Ia
SnoaL_3
Nop10p
Motif
Other DBs
NCBI-ProteinID:
UBS32006
LinkDB
All DBs
Position
2358718..2360892
Genome browser
AA seq
724 aa
AA seq
DB search
MSIDPTQMSEADAANELMRLAKAIAHHNRLYHADDAPEITDQEYDALVRRNAALESAFPH
LVRADSPSQSVGHEIASSPLGKVKHEVRMMSLDNAFSDEEVAEFVARVRRFLSIDETVPL
VFTAEDKIDGLSCSLRYERGELVRAATRGDGQVGEDVTPNVAHIVDIPQKLYGEVPDVFE
VRGEVYMATADFHALNARLMEEARAKAAAAGEEFDPAKVRQFANPRNAAAGSLRQKDPRV
TAERPLRFWAHGWGAASAVPGVTQHDMMQQIAAWGLPISPEMVRCENLDAMLSAYRRIAE
GRGALPYEIDGVVYKVDRLDWQGRLGFVAKAPRWAIARKFPAEQAETTLEAIDIQVGRTG
KLTPVGRLAPVLVGGVTVTNVTLHNRDEIARLGVRPGDRIKVQRAGDVIPQVVENLTRDA
ERPAYTFPDHCPECGSEAVAEEGEVDVRCTGGLICPAQRTERLKHFVSRGALDIDGLGEK
TIDQFFALGWLESPADIFRLRERRDEILSLEGWQDKSVDNLLAAVESKRHPDAARLLFGL
GIRHVGAVTARDLMKGLHDIRVLPEKAAEFAAYREENPRGADEKESPFNTRMVDAVKRIF
EVRTDGIGIAVGHALADFFHEEHNRQVWNDLFAQVDPPRYEVETRDSEVAGKTVVFTGKL
ETMSRDEAKAQAERLGAKAAGSVSAKTDLVVAGPGAGSKLKKAAELGIPVIDEAEWAQIV
AAAG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgaccccacccagatgtccgaagccgacgccgccaatgagctcatgcggctc
gccaaggccatcgcacatcacaatcgcctgtatcacgcagacgacgcgccagagattacg
gatcaggaatacgatgcactggtgcggcgcaatgccgcgctggaaagtgcctttccccat
ctcgtccgcgctgacagcccgtcgcaatcggtgggacacgagattgcttcgtccccgctg
ggcaaggtcaagcacgaagtgcgaatgatgagcctcgacaatgcgttttccgacgaagaa
gtggctgaattcgttgcgcgggtccgacgctttctctcgatcgacgaaaccgtcccgttg
gtgtttacagctgaagacaagatcgatggtctttcgtgttccctgcgttatgagcgaggg
gagctggttcgcgcggctacacgcggcgatgggcaggtgggcgaagatgtcacgcccaac
gttgcccatatcgttgatattcctcagaaactgtacggtgaggtccccgatgttttcgag
gtgcggggcgaagtctatatggcgacagcagacttccatgctcttaacgcgcgactgatg
gaagaagcgcgggcgaaggccgcggctgccggcgaggaattcgatcctgccaaagttcgc
caattcgccaatccgcgcaatgcagccgccggttcgctgcgccagaaagacccgcgagtt
accgccgaacgcccgttgcgcttctgggcgcatggctggggggcggcgagcgcagttccg
ggcgtaacacagcatgacatgatgcaacagattgccgcatgggggctgcccatttcgcca
gagatggtgcgctgcgaaaatctcgatgcgatgctttctgcctatagacgaattgcggag
ggcaggggcgcgctgccctatgaaatcgacggtgtggtttacaaggtcgatcggctcgat
tggcagggtcgtcttgggttcgtggcgaaagcaccgcgatgggctatcgctcgcaagttt
ccggcggaacaggccgaaacaacgctggaggcgatcgatatccaggttggccgcacgggt
aagcttactccggtcgggcgtctggcgccggtgcttgtcggcggtgtgactgtgacgaat
gtcaccctccataatcgcgacgagatcgccagacttggcgtgcggccaggtgaccggatc
aaagtgcagcgtgccggggacgtgattccgcaagtagttgaaaatctgacacgagatgcg
gagcgacctgcatatactttccccgatcattgcccggaatgcggcagcgaggcggttgcc
gaagaaggcgaagtcgatgtgcgttgcactggcgggctgatttgcccggcgcagcgtacc
gaacggctgaagcatttcgtaagtcgcggcgcgctcgatatcgacggcttgggcgaaaag
acgatcgaccagtttttcgcgctgggttggctggaaagtcccgccgacattttccgcttg
cgtgaaaggcgcgacgaaatactctcgctcgaagggtggcaggacaagtctgtggacaac
ctgttggctgctgtggaaagcaagcgccacccggatgctgcacgcctcctgtttggtttg
ggcattcgccacgtcggcgcggtaacggcgcgtgacctgatgaaggggctgcacgatatt
cgcgtgttgcctgaaaaggccgctgaatttgccgcttatcgggaagaaaacccccgcgga
gcggatgagaaggaaagtccgttcaacactcgtatggtcgatgcggtaaaacgaattttc
gaagtgcggactgacgggatcggtatcgcagtcggtcatgcgctggcggatttcttccac
gaggagcacaatcggcaggtgtggaatgatctgttcgctcaggtcgatccgccgcgttac
gaagtcgaaacccgcgacagtgaagtcgctggcaagacggtggtatttaccggcaagctt
gaaacgatgagccgggatgaagcgaaggcgcaggccgaacgcctcggtgccaaagctgcc
ggatcggtgagcgcaaagaccgatctggtcgtggctggccccggtgccggttcgaagctg
aagaaagcggctgagctgggcattcccgttatcgacgaagcggaatgggcgcagatcgtg
gcagcggcagggtga
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