Alteromonas sp. I4: AltI4_19970
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Entry
AltI4_19970 CDS
T10627
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alto Alteromonas sp. I4
Pathway
alto03030
DNA replication
alto03410
Base excision repair
alto03420
Nucleotide excision repair
alto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AltI4_19970 (ligA_2)
03410 Base excision repair
AltI4_19970 (ligA_2)
03420 Nucleotide excision repair
AltI4_19970 (ligA_2)
03430 Mismatch repair
AltI4_19970 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alto03032
]
AltI4_19970 (ligA_2)
03400 DNA repair and recombination proteins [BR:
alto03400
]
AltI4_19970 (ligA_2)
Enzymes [BR:
alto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AltI4_19970 (ligA_2)
DNA replication proteins [BR:
alto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AltI4_19970 (ligA_2)
DNA repair and recombination proteins [BR:
alto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AltI4_19970 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AltI4_19970 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
AltI4_19970 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AltI4_19970 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
BBO27609
LinkDB
All DBs
Position
2321257..2323290
Genome browser
AA seq
677 aa
AA seq
DB search
MNTQSISAQMEALRDTINEYNYQYYVLDNPTVPDSEYDRVFQALKALEAENPALITPDSP
TQKVGGQPLGAFEQVTHEVPMLSLDNAFSEDELNAFEKRVKDRLKDDSALPFSCEPKLDG
LAVSILYEQGQLVRAATRGDGQVGENITANVRTIGNVPLKLRGQDIPERIEVRGEVFMPK
AGFEKLNNAQREAGLKVFANPRNAAAGSLRQLDSRITAKRPLMFYAYSLGVVSPDTFELP
DSHHARLRQLAEWGLPMCPEIDTATGAKGCQTYYESILQQRDSLPYDIDGVVFKVDTIAL
QETLGFVARAPRWAIAQKFPAQEEMTRLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNA
TLHNQDEIDRLGVKVGDTVVIRRAGDVIPQVVSVVAAKRPEDARDIVFPLVCPVCDSHVE
KLEDEAVARCTGGLICGAQRKQALKHFASRKAMDIDGLGDKLIEQLVDADLLKTPVDIFH
LTLPELVQLERMGEKSAVNLLNAIEASKQTTLAKFLYSLGVREVGEATAQNLAMHFTNLD
AIQAADIEALQSVPDVGIIVAQHIANFFAEEHNLDVLKGLIEAGIQWPAIEAPNVDEQVL
QGKTAVVTGTLSEMSRSDVKALLQQAGAKVAGSVSAKTDFLVAGEKAGSKLTKAQELGVE
VWDEARLMAFLREQNLV
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgaatacacaatccatcagcgcgcaaatggaagcgttgcgcgataccatcaatgaatat
aactaccagtactatgtactggacaatcctactgtgccagacagcgagtacgatcgtgtt
tttcaggcattaaaagcccttgaggctgaaaatccggcattgataacgcctgattcaccc
acgcaaaaagtaggtggtcagccgcttggggcatttgaacaagtgacccatgaagtgccg
atgttgtcactggataatgcgttcagtgaagatgagttaaacgccttcgaaaagcgtgtg
aaagaccgcttaaaagatgactctgcattgccgttcagttgcgagccgaaattagatggt
ttggctgtgtctattttgtatgaacagggtcaactggtaagagccgcaacgcgtggtgat
ggccaggtgggtgagaacatcaccgcaaatgttcgtaccattggtaatgtgccgctgaag
cttaggggtcaggatattccagagcgcattgaagtgcgtggcgaggtgttcatgcccaaa
gctggttttgaaaaattgaacaatgcacaacgagaagccggtttaaaagtttttgcgaat
cctcgtaatgccgccgcaggcagcctgcgtcagttggactcacgcataacagctaaacgt
ccgctcatgttttatgcatattcacttggcgttgtttcgcccgacacgtttgaattaccc
gattcgcaccatgcccgccttcgtcaactggcggagtggggactccccatgtgtcccgaa
atcgataccgcgacaggagcaaagggctgccagacctattacgagagtatcttacaacag
cgcgattctttgccatacgatattgatggcgtggtgtttaaggtcgataccattgcactg
caggagacactgggtttcgtagcaagagcgccgcgttgggcaattgcacagaaatttcct
gctcaggaagaaatgacccggctactggatgttgaatttcaggttggccgcacaggggca
attacaccggtagccaggctagagcccgtgtttgttggcggggttacggtgtcgaacgcc
accttacacaatcaggacgagattgatcgacttggcgtaaaagtaggcgataccgtcgta
attcgccgtgctggtgacgtaattcctcaagtggtctcagtagtggccgctaagcgccct
gaagacgccagagacatcgtctttccgcttgtgtgtccggtgtgtgattcacacgtagaa
aagctggaagacgaagcggttgcgcgctgtaccggcggactgatctgtggtgcgcaaaga
aaacaggcgctgaaacactttgcatcgcgaaaagcaatggatatcgatggcctgggagat
aagttgattgaacaactggtggatgccgatttactgaaaacaccggttgatattttccat
cttaccttgcccgaacttgtgcaactggagcgtatgggtgagaagtcagcagtaaacctg
ctcaacgctatcgaggcatccaagcagacaacgctggcgaaatttttatattctctgggg
gtacgggaagtcggcgaggccacagctcaaaacctggccatgcatttcaccaatctcgat
gctattcaggcagcagatattgaagcattgcagtcagtgcctgacgtaggcattatcgtt
gcccaacacattgctaatttctttgcagaagaacataacctggatgtcttgaaagggtta
attgaagcgggtattcagtggcctgccatagaagcgccaaacgttgacgaacaggtattg
cagggtaaaactgcagtggtaacaggcacgctcagcgagatgtctcgtagcgacgttaaa
gcgttgcttcagcaagcaggggcaaaagtggcaggcagtgtgtcggccaaaaccgatttt
ctggtcgccggcgaaaaagcgggttcaaagctaaccaaagcgcaggagttgggtgtagag
gtgtgggacgaagcgaggctaatggcgttcttacgcgaacaaaatctggtttga
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integrated database retrieval system
