Anastrepha ludens (Mexican fruit fly): 128858040
Help
Entry
128858040 CDS
T10909
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
alud Anastrepha ludens (Mexican fruit fly)
Pathway
alud03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
alud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
128858040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alud03400
]
128858040
Enzymes [BR:
alud01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128858040
DNA repair and recombination proteins [BR:
alud03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
128858040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
BRCT_2
DNA_ligase_A_C
BRCT
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
128858040
NCBI-ProteinID:
XP_053949942
LinkDB
All DBs
Position
3:57603037..57606645
Genome browser
AA seq
926 aa
AA seq
DB search
MDISKNIKFADICSMLDKVKNAKNQASKEKILRRYYESFLKFRQIFRKEQGIPAESPEDG
SSSFFCVLRCLIPRDDMSRKAYGLQITTLGGVYIDVLQLSKDSNDVQRLQARRYNGSQGD
YADIVYAVLMPRCRHEPSELSLYEVHQMLDTIAEDDRQDTKKVLTRLTEIASAQEQMWFI
RLLLKNMHLGIGEQRIFALMHAQARDLHRRCSNLKRVCCLLADNKVDNEHTKTEVVPGDS
KINVASSTFNINKIVEPFQHIQGMLCEKFNGSIEELMADDVLYLETKMDGERFQLHYANG
RFKYISRRGIDYTHSFGEDYKSGKFTPLLQSLLPSELQSIILDGEMMVYDMQLKCFRDKG
ENTDVKHLDNKLNWRPCFVVFDVLYFNGNSLLEMPYAQRCQKVVELIRVEQPGILQIMRP
IKLTTVEQFRQLFQQALDAKEEGVVLKKQNSIYRPDIRIGSGWYKIKADYITGLTTEFDL
LVIGGFYNRTRTFIKSFLLGVLKYTSDTQFAVYSVGKVDNRTRQSMRLNDALKPHWQDRQ
MEPPPDWYHYKQSSAEGRPDVWIEPSKSVILQIRATDLAPSAAFALSKSLHFPRIEMWRN
DKMWNECLSLHDYMEMFQGERGLKKIHKRGVELGDLTAPQKRRKLTVAERRKLGILSYER
RFNPAEIELSSNLFEGFSFCILSASLKNGYTPEALKALVVRNGGEIVENPIQDSKCLSIA
GDKTFRVQVLCKSRHYNIAKLEWLVDTCKRQELQLTPTDMVCVTNELETEFSQIFDKYGD
PYTECTDVEQLMKVFDGITDEDLAIVEPSAADAAELELILYDENTDFFSNCNATFYSIDQ
YTQLAKLIYQYLGGRCYDVPNDVNIQSINYVFINASLIDKVKLKAWILKRFKNHLGNLHV
VNIAWIIHSQRAKRKLDVFEYMCNYF
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggatatctcgaaaaatataaaattcgccgatatctgttcgatgctcgacaaagtgaag
aatgctaaaaatcaagcttcaaaggaaaagatattacgtcgctattatgagtcatttcta
aagtttcgacaaatattccgcaaagaacaagggatccctgcggagagtcctgaggatggc
agttccagttttttctgcgtgctcagatgtctgattccgcgggacgacatgtcacgaaag
gcatatggattgcaaataacaacgctcggtggcgtgtacattgatgtactacagctttcg
aaagattccaacgatgtgcagcgtttacaagcgcgtaggtataatggatcacaaggtgac
tatgcagatatcgtatatgcagtgctgatgcctcgttgcaggcacgaaccaagtgaactc
tctctgtacgaagtgcatcagatgttagatactatagcggaggatgatcgacaagataca
aaaaaggtactaacccggttaactgaaatagcttcggctcaagagcaaatgtggttcata
cgcctactgctgaagaacatgcacctcggtattggcgaacaacgtattttcgcgctcatg
catgcccaagcaagagatttgcatagacgttgctcaaatttgaagcgcgtgtgttgtctg
ctggcggataataaagtagataatgaacacacaaaaacagaagtcgtacctggcgattcg
aaaataaatgtcgccagcagcacctttaatataaataaaattgtagaaccctttcaacac
atacagggaatgttgtgtgaaaagtttaacggtagtattgaagaattaatggctgatgac
gtgctttacttagagacaaaaatggatggtgaacgttttcaactgcattatgcaaatggg
cgtttcaaatatatatcccgcagaggaattgattacactcacagcttcggtgaagactat
aagagtggtaagtttacgccgctacttcagtcgctcttacctagcgaattgcagtccata
atactcgatggcgaaatgatggtatacgatatgcagctaaaatgcttccgtgacaaaggc
gagaatacagacgttaagcatttggataacaaattgaattggcgaccttgttttgtggta
ttcgatgtgctctactttaatggcaatagtttgctggaaatgccatacgcacaacggtgc
cagaaggtcgtcgagcttattagagtagagcagccaggaatattgcaaatcatgcggcca
attaagttaacaacggtggagcagtttcggcagctctttcagcaagcattggatgcaaaa
gaggagggagtcgtgctgaagaagcaaaactctatctaccgcccagacatacgcattgga
agtggctggtataaaataaaagccgattacattactggattgacaactgagttcgattta
cttgtaattggtggtttctacaatcgaacgcgtacatttattaagtcttttttgctgggt
gtgctcaaatacacctcggacacacaatttgccgtttacagcgtcggtaaggttgacaat
agaaccaggcagagtatgcggctgaatgacgctctcaaaccgcattggcaagacaggcaa
atggaaccaccacccgattggtatcattataaacagtccagtgctgaaggcagacctgat
gtgtggattgagccaagcaaatctgtaatattgcaaatcagagcaactgatttggcacct
tctgcagcctttgccctttctaaatcgttgcatttcccacgcatagaaatgtggcgtaac
gacaaaatgtggaatgagtgcctttcgctgcacgattacatggaaatgtttcagggtgaa
aggggtctcaaaaagatacataagcgcggcgttgaattgggagatttaacggcaccacaa
aagagacgtaaattaaccgtcgcagagcgtcgtaaattgggcatcttgtcctatgagcgt
cgttttaatccagctgagattgaattatcttcaaatctattcgaagggttctccttttgc
atactgagtgcaagtttaaagaacggctatacgccggaggcactaaaagcgttggtggtg
cgtaatggcggtgaaatagtggaaaatcccatacaagactccaaatgtttatcaattgcg
ggtgataaaacctttcgtgtccaggttttgtgtaaatcgcgtcattacaatatagcgaaa
ttggagtggttggtagatacatgcaagcgacaggaattgcaattaactcccacagatatg
gtttgcgtaacgaacgagttagaaactgaattttcgcaaatattcgataaatatggcgac
ccatatacggaatgtacagatgttgagcaattgatgaaagtgttcgatggtattacagac
gaagatcttgcaatcgtggagccttcagccgcagatgcagctgaacttgaactgatttta
tatgatgaaaatacggatttctttagcaattgcaatgctacattctacagcatagatcag
tatacgcagctagcaaaattgatttaccagtatttaggaggccggtgctatgatgtccca
aatgatgttaacattcaaagtattaattacgttttcatcaacgccagtttaattgataaa
gttaaactgaaagcgtggatcttaaaacgttttaagaatcatttaggaaatttgcatgtt
gtaaatattgcttggataatacattcgcagcgcgctaaaaggaagctggatgtattcgaa
tatatgtgcaattatttttag
DBGET
integrated database retrieval system
