Anaerohalosphaera lusitana: STSP2_00368
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Entry
STSP2_00368 CDS
T06331
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alus
Anaerohalosphaera lusitana
Pathway
alus03030
DNA replication
alus03410
Base excision repair
alus03420
Nucleotide excision repair
alus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STSP2_00368 (ligA)
03410 Base excision repair
STSP2_00368 (ligA)
03420 Nucleotide excision repair
STSP2_00368 (ligA)
03430 Mismatch repair
STSP2_00368 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alus03032
]
STSP2_00368 (ligA)
03400 DNA repair and recombination proteins [BR:
alus03400
]
STSP2_00368 (ligA)
Enzymes [BR:
alus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STSP2_00368 (ligA)
DNA replication proteins [BR:
alus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STSP2_00368 (ligA)
DNA repair and recombination proteins [BR:
alus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STSP2_00368 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STSP2_00368 (ligA)
MMR (mismatch excision repair)
DNA ligase
STSP2_00368 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STSP2_00368 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
YdjO
Lar_restr_allev
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AQT67225
UniProt:
A0A1U9NHE0
LinkDB
All DBs
Position
complement(403034..405085)
Genome browser
AA seq
683 aa
AA seq
DB search
MAEDVKKKIEKLRDEIRHHDRLYYVENSPEISDQEYDKLFHKLQKLEEEQPDLITPDSPT
QRVGGEPVEGFDNVRHSVPMLSIDNTYNEGELRNFDKRVAKALETDDYTYVIELKIDGVA
MSLRYEDRMLVRGATRGDGVTGDDVTSNVKTIHAIPLKLSDSDDIPDVLEVRGEVYMPKK
SFAALNEYRDEQGQPPFANPRNATAGSLKTLDPSVVAKRNLAFFAYSVGETSTELADTHY
EALKKLESFGLPVDPRTKRVGNIDDVIDFLQKWADKKTDLDYQIDGMVIKVDSYDQQDRL
GATGRAPRWCIAYKFPAERKETTVKSVQTQVGKTGTLTPVAHLEPVHVSGTTVSRASLHN
FDEVRRLDVREGDKVLIEKAGEIIPQVVEVTNADRKGRSEKVKPPKECPICGTEVKVIER
KRSGSEEDRAAKGEQTHTYVCPNGSCPAKVREEFIHFVGRSQMDIEHLGPKIIDQLLDKR
LIENFADIYRLDHFKLGRLDRMGAKSIERLLDSIEESKERPLFRFITALGIPNIGTQNAE
ILADHFGSIENLMDIKREDLEAIDQIGPVIADSVYDYFHDEGNRKVIRELLDEGVKPKGP
KKKSNKLEGKTFVVTGTLSHFKRDDIKRTIKNNGGKASSSVSKNTDYLVAGDNPGSKYDK
AQQLGVSVISEGEFAEMADIELD
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggacgtcaaaaagaagatcgaaaagctgcgggacgagatacgtcatcacgat
cggctttactacgtggagaacagcccggagatatccgaccaggaatacgacaagctgttt
cataaattgcagaagctggaagaggagcagccggatctgatcacaccggattcacccacg
cagagggtaggcggggagccggtggaaggatttgacaatgtgcggcattcggtgccgatg
ctgagtatcgacaacacgtataatgagggcgagctgcggaatttcgacaagcgggtcgca
aaggcgctggagacggatgactatacgtatgtgatcgagctgaagatcgacggggtcgcg
atgagcctgcggtacgaggatcggatgctggtgcgaggcgcaacgcggggcgacggcgtg
accggcgacgatgtgacgagcaatgtcaagacgatccacgcgataccgctcaagctcagc
gacagcgatgatataccggatgtgctggaagttcgcggcgaggtgtatatgccgaagaag
tcgtttgccgcactgaatgagtatcgcgacgagcagggacagcctccgttcgcgaatccg
cggaacgctacggccggttcgctcaagacgctggatccgtcggtggtggcaaagcggaac
ctggcgttcttcgcgtattctgtcggtgagacgtctacggagttggcggatacgcattac
gaggcgttgaagaagctcgagtctttcggcctgccggtggatccgcgtaccaagcgggtg
ggcaatatcgacgacgtgatagatttcctgcagaagtgggcggataaaaagactgacctg
gattatcagatcgacggaatggtgataaaggtggactcgtacgatcagcaggatcggctt
ggggcgaccggtcgtgcgccgcggtggtgtatcgcgtacaagttcccggccgagcggaag
gagaccacggtgaagtcggtgcagacgcaggtgggtaagactggcacgctgacgccggtg
gcgcatctggagccggtgcatgtttcggggacgacggtttcgcgggcgtcgctgcataat
tttgacgaggtgcggcggctggatgtgcgcgagggggacaaggtgctgatcgagaaggcc
ggcgagataataccgcaggtggtggaggtgacgaacgcggatcggaaggggcggtcggaa
aaggtgaagccgccgaaggagtgtccgatctgcggtacggaggtgaaggtgatcgaacgg
aagcggtccgggtccgaagaggatcgggcggcgaagggcgagcagacgcatacgtatgtt
tgtccgaacggatcgtgtccggcgaaggtgcgtgaggaatttatacatttcgtcgggcgg
tcgcagatggatatagagcatctggggccgaagataatcgaccagctcctggacaagcgg
ctgatcgagaattttgcagacatttatcggctggaccatttcaagctgggtcggctggat
cggatgggggccaagagtatcgagcggctgctggacagtatcgaggagtcgaaggagcgg
cctttgtttcggtttattaccgcgttgggtattccgaacatagggacgcagaacgccgaa
attcttgcggatcatttcgggtcgatcgagaatctaatggacatcaagcgagaggacctg
gaggcgatagatcagatcgggccggtgatcgcggattcggtgtacgactattttcatgac
gaggggaaccgcaaggttattcgcgagctgctggatgaaggcgtgaagccgaaggggcct
aagaagaagtcgaacaagctggagggcaagacgtttgtggtgacgggtacgctgtcgcac
ttcaagcgggacgatataaagcggacgataaagaacaacggcgggaaggcgtcgtcgtcg
gtttcgaagaatacggactacctggttgcgggcgacaatccggggagcaaatatgacaag
gcgcagcagcttggtgtgtccgtgatcagcgagggagaattcgcggagatggcggatatt
gagctggactga
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