Acinetobacter lwoffii: FOB21_13140
Help
Entry
FOB21_13140 CDS
T06349
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alw
Acinetobacter lwoffii
Pathway
alw03030
DNA replication
alw03410
Base excision repair
alw03420
Nucleotide excision repair
alw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOB21_13140 (ligA)
03410 Base excision repair
FOB21_13140 (ligA)
03420 Nucleotide excision repair
FOB21_13140 (ligA)
03430 Mismatch repair
FOB21_13140 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alw03032
]
FOB21_13140 (ligA)
03400 DNA repair and recombination proteins [BR:
alw03400
]
FOB21_13140 (ligA)
Enzymes [BR:
alw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOB21_13140 (ligA)
DNA replication proteins [BR:
alw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOB21_13140 (ligA)
DNA repair and recombination proteins [BR:
alw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOB21_13140 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOB21_13140 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOB21_13140 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOB21_13140 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QGR75500
LinkDB
All DBs
Position
2471071..2473110
Genome browser
AA seq
679 aa
AA seq
DB search
MTQDATVIAQMRQLIQLLAKHNHAYYVMDQPSIEDSEYDQLFHQLRALEQQYPDLIQSDS
PTDKVGGQVLSKFVTVTHAVPMLSLGNVFNQEDLLAFARRIEERLPNQKIEYDVELKFDG
LAISLWYEHGVLTRGVTRGDGETGEDITQNVRTIRNLPKLLSPVNGIIPDLLEVRGEVLM
PKSGFEKLNAANAAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPHHGQ
TTMSASLEWLHQFGFAVGERHFICDSIQDVQKVYEQIIDERASLSVEIDGMVIKVNDLKQ
QQQLGFLSREPRWATAYKFPAVAALTTVENINWQVGRTGTLTPVARLNPVAVGGVTVSNV
TLHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDAVQVHLPEQCPVCDSPVV
MPEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWAESLLHLNLLKDVSDIYH
LHEHRETLLGIEKMGAKSVQNLLDAIENSKKTTLAAFIYALGIRGVGETTARMLANTFQT
LEALRNADIEALKKTPDVGDITAEWIVDFFQAPHNLEVLDRLLAAGIHWDAPIAPTRQPL
NGESWVVTGTLSSMGRDDATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIP
VINEQQFIGLMQDYGQLEA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagatgccactgtcattgcgcaaatgcgtcaactgattcaactgcttgccaag
cataaccatgcttattatgtgatggatcaaccgagcattgaagacagtgaatatgatcag
ctctttcatcagcttagagccctagaacaacaatatcctgatctgatccagtccgatagc
ccgaccgataaagtcggtggacaggtgctttcaaaatttgtgaccgtaacacacgccgtg
ccgatgctgtcattgggtaatgtctttaatcaggaagatctgctggcttttgcccgccgt
attgaagaacgtttgccaaatcaaaaaattgaatatgatgtggaactgaaatttgatggt
ctggccatttcactctggtatgagcatggcgtactgacgcgtggggtgacacgcggcgat
ggggaaaccggtgaagacatcacccagaatgtcagaaccattcgcaacctgccgaaactt
ttatctccggtgaatggcatcattcccgatttgttggaagtccgcggcgaagtgttgatg
ccgaaatccggttttgaaaaattgaatgctgccaatgccgccaaaggtgaaaagaccttt
gctaatccgcgtaatgctgcggcaggaagtttgcgtcagctggacccgaatattgctgcc
tcgcggccattggctttttatgcttatgggattgctcagtgcgtgccgcatcatggacaa
accactatgtccgccagtctggaatggttacatcagttcggttttgcggttggcgagcgt
cactttatctgtgacagtattcaggacgtgcaaaaggtctatgaacagatcattgatgag
cgtgccagtctcagtgtcgaaatcgatggcatggtgattaaggtcaatgatctgaaacag
cagcaacagcttggtttcctgagtcgcgagccacgctgggctactgcctataaatttccg
gccgttgctgcactgactacggtagaaaatattaattggcaagtgggtcgtactggaaca
ttgacgccggttgcgcgtttaaatccggtcgctgtcggcggagtaactgtttccaatgta
accctgcacaatattggtgaaattcaccgtctggatgtacgcattggtgatacggtcagt
gtttatcgtagtggcgatgtaattcctaaggtggaaaaagtctggccggaatttcgcccg
gtggatgcagtccaagtgcatttacctgaacaatgtccagtctgtgattcacccgtggtc
atgccggaaggcgaagccttggcacggtgttccggtgggctgtattgtgccgcacagcgt
attgaggccattcgtcactttgtctcacgtaaagccatggatattgaaggcttgggtgac
cgttgggcagaatcgttgctgcatctgaatcttctgaaagatgtctcagatatttaccat
ctgcatgaacatcgtgagactttgctaggtattgaaaagatgggggccaaatcggttcag
aatcttttagatgctatcgaaaacagcaagaaaactacactggctgcttttatctatgct
ctcggtattcgtggggtgggtgaaaccacggcgcggatgctggccaatactttccagacg
ctggaggcattacgcaatgctgatattgaagcattaaagaaaacaccggatgttggtgat
attaccgcagagtggattgttgatttcttccaggcaccgcataacttggaagtattggat
cgcttgttggctgctggtattcattgggatgcaccgatcgcaccgactcgtcagccgtta
aacggcgaaagctgggtggtcaccgggactttaagcagtatgggacgagatgatgcaacc
cagttattgcaagccttaggtgcacgagtcagtggcagtgtatccagcaaaaccaaatgt
gtggttgcgggtgaaaaagctggctcaaaactggataaagcagaaaaacttggtattcca
gtgatcaatgaacaacagtttattggcttgatgcaagactatggtcagcttgaagcctaa
DBGET
integrated database retrieval system
