Allobranchiibius sp. GilTou73: LVQ62_08945
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Entry
LVQ62_08945 CDS
T07800
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
alx
Allobranchiibius sp. GilTou73
Pathway
alx03030
DNA replication
alx03410
Base excision repair
alx03420
Nucleotide excision repair
alx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LVQ62_08945 (ligA)
03410 Base excision repair
LVQ62_08945 (ligA)
03420 Nucleotide excision repair
LVQ62_08945 (ligA)
03430 Mismatch repair
LVQ62_08945 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alx03032
]
LVQ62_08945 (ligA)
03400 DNA repair and recombination proteins [BR:
alx03400
]
LVQ62_08945 (ligA)
Enzymes [BR:
alx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LVQ62_08945 (ligA)
DNA replication proteins [BR:
alx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LVQ62_08945 (ligA)
DNA repair and recombination proteins [BR:
alx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LVQ62_08945 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LVQ62_08945 (ligA)
MMR (mismatch excision repair)
DNA ligase
LVQ62_08945 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVQ62_08945 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
UIJ33324
LinkDB
All DBs
Position
1779268..1781418
Genome browser
AA seq
716 aa
AA seq
DB search
MSEEPVPADDVASGIPDDARHEWTQVAEEVRAHQFAYHVRDAPTVSDGEYDALVRRLNEL
EEAYPPLRTPDSPTQQVGATYSTDFTPVDHVERMLSLDNAFSAEEMAAWATRVERDAGGA
DVHYLCELKIDGLAINLLYEDGRLTRGVTRGDGRTGEDVTLNVRTVEGIPHTLSGGEVEV
PELVEVRGEVFFPVEAFTALNERLVEQGKAPFANPRNAAAGSLRQKDPKVTATRPLRMLV
HGIGARRGFDIARQSEAYDLLGAWGLPVSTHYRVVDTPEQVQDYIEWAGSHRHSVEHELD
GVVVKVDEVPVQRALGATSRAPRWAIAFKYPPEEVNTKLLDIQVNVGRTGRVTPFGVMRP
VKVAGSTVEMATLHNASEVRRKGVLIGDTVVLRKAGDVIPEIVGPVAELRDGSEREFEMP
TDCPSCGTPLAYERDGDKDIRCPNARSCPSQLRERLFGLAARGGFDIEALGWEGATALLD
AGVLQDESTLFRLTREQLVRVDLYTRAAKKNDPPETVVDGKVLSANGIRLIDNLETAKAQ
PLWRVLVALSIRHVGPTAARALAGEFGSMDAIREATQEQLAATDGVGPVIAQAVVEWFAV
DWHLQIVQRWAQDGVRMADEVDASIDRTLEGLTVVVTGSLEGFSRDESKEAIIVRGGKAS
GSVSKKTDFVVVGANAGTKATKAEDLGLTILDETGFRTLLEQGADAVRPSPADADD
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaggaaccggtgcctgccgacgacgtcgccagcggcatccccgacgatgcccgg
cacgagtggacccaggtggccgaggaggtccgcgcccaccagttcgcctatcacgtgcgg
gacgcgcccaccgtcagcgacggcgagtacgacgcgctggtccggcggctgaacgagctg
gaggaggcctaccccccgctgcgcacaccggacagccccacccagcaggtcggagcgacg
tacagcaccgacttcacgcccgtcgaccacgtcgagcggatgctgagcctggacaacgcg
ttcagtgccgaggagatggccgcgtgggccacgcgagtggagcgcgacgcgggcggcgcc
gacgtgcactacctgtgcgagttgaagatcgacggcctggcgatcaacctgctctacgag
gacggccgcctcacgcgcggtgtcacccgcggcgacggccgcaccggggaggacgtcacc
ctcaacgtgcgcaccgtcgaggggatcccgcacaccctgtccggcggcgaggtcgaggtg
cccgagctggtggaggtgcgcggcgaggtgttcttccccgtcgaggcgttcacggcgctg
aacgagcggctggtcgagcagggcaaggcgccgttcgccaacccccgcaacgccgccgcc
gggtcgctgcggcagaaggatcccaaggtcaccgcgacccgaccgctgcggatgctggtg
cacggcatcggcgcgcggcgcggcttcgacatcgcccggcagagcgaggcctacgacctg
ctcggcgcctggggcctcccggtgtccacgcactaccgcgtggtcgacacccccgagcag
gtgcaggactacatcgagtgggccggcagtcaccggcactccgtcgagcacgagctggac
ggcgtcgtggtcaaggtcgacgaggtgccggtgcagcgcgcgctcggcgcgacgtcgcgg
gcgccgcggtgggcgatcgcgttcaagtacccgcccgaggaggtcaacaccaagctgctg
gacatccaggtcaacgtcgggcgcaccgggcgcgtgacgccgttcggggtgatgcggccg
gtgaaggtggccgggtccacggtcgagatggccaccttgcacaacgcctcggaggtacgc
cgcaagggcgtgctcatcggcgacaccgtcgtgctgcgcaaggccggcgacgtcatcccc
gagatcgtcgggccggtggcggagctgcgcgacggcagcgagcgcgagttcgagatgccg
accgactgcccgtcgtgcggcacaccgctggcctacgagcgcgatggcgacaaggacatc
cggtgtccgaacgcgcgatcctgcccgtcgcagttgcgggagcggctgttcgggctcgcc
gcccgcggtggtttcgacatcgaggcgctgggctgggagggggccaccgcgctgttggac
gccggggtcctgcaggacgagtcgaccctgttccgcctgacgcgcgagcagctggtgcgc
gtcgacctctacacccgcgccgcgaagaagaacgatccgcccgagaccgtggtcgatggg
aaggtactgtccgccaacggcattcggctcatcgacaacctggagacggccaaggcgcag
ccgctctggcgggtgctggtcgccctgtccatccggcacgtcggacccaccgcggcgcgg
gcgctggcgggggagttcgggtcgatggacgccatcagggaggccacgcaggagcagctg
gccgcgaccgacggtgtcgggccggtgatcgcgcaggccgtcgtcgagtggtttgcggtc
gactggcacctccagatcgtgcagcggtgggcgcaggacggcgtccgcatggccgacgag
gtcgacgcgtccatcgaccggaccctcgagggcctgaccgtcgtggtcacgggctcgctg
gagggtttctcgcgcgacgagagcaaggaggcgatcatcgtgcgcggcggcaaggccagc
ggttcggtctccaagaagaccgacttcgtcgtggtgggcgccaacgccggcaccaaggcg
accaaggccgaggacctcggactgacgatcctggacgagaccggtttccgcaccctgttg
gagcagggcgccgacgcggtgcgtccctctccggccgacgcggatgactga
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