Arabidopsis lyrata (lyrate rockcress): 110224774
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Entry
110224774 CDS
T01578
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
110224774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
110224774
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110224774
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
110224774
NCBI-ProteinID:
XP_020867477
LinkDB
All DBs
Position
Unknown
AA seq
948 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGVLIPVDITRPNPNGFEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQ
SRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITYPGQQEKCFVCGQTGHFAADCPGKSGSTNAAADIPIHKKKYQF
LNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLL
MHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEMKQR
SRRDPSEVPPEPIDDKIKLGEPGYKERYYAEKFNTTNPEETEQIKQDMVLKYVEGLCWVC
RYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPLDQLMGTLPAASSNALP
GEYRKLMTDPSSPILKFYPADFDIDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTV
EERQRNSVMLDLLYVHPAHPLGQRILQYYHIYQHLPPHECLPWMIDPNSSQGMNGFLWFS
ERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSADIKPF
PLLWHEDNSNRRRQARDRPQVAGAIAGPSLGEAAHRLIKNTLNMKSSTGAASGLIDPNGY
YRNVPGNHYYGGVNRPRAPGPSPYRKAYDDDSSYYYYGKYNNSSQGTFSNGPRYPGPSNG
SQDYNRNYNSKIVAEQQNRGGLRAGISGLSIEDNGRSKQLYSSYTEAANANLNRLPSPPT
QWIGTQPGGNFVGGYYREGVGYGETNGKPVKKVIYQAKTQQSHRGTNE
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcgttctacagatggctcgccgaccgatacccgaagtcaattagtgac
gtcgttgaagaagaacctaccgatggaggtcgtggtgtcctaattcctgttgatatcacc
agacctaaccctaacggcttcgagtttgataatttgtatcttgatatgaatggtatcatt
catccttgtttccatcctgaaggaaagcctgcacctgccacgtacgatgatgtatttaaa
tcgatgtttgagtacattgaccatctttttactctagtacgtccgaggaagattctttat
ttggctatagatggagttgcgcccagagcaaagatgaatcagcagcgttctcgacgtttc
agggctgcaaaggacgcagcagaggctgaagctgaagaagagaggttgagaaaagatttt
gagatggagggccaaatcttgtctgcgaaagagaaagctgaaacctgtgattcaaatgtc
attactcctgggaccccttttatggctatactgtcagtcgctcttcagtattacatccaa
tctaggttaaaccataaccctggctggagatatgttaaggttattctttctgattcaaat
gttccgggcgaaggagaacacaagataatgtcatacattcgtctccaacgtaatcttcct
ggttttgatccaaatacacggcattgtctatacggtctggatgcagatttgataatgctc
tccttagctacacatgaagttcacttttccatcttaagagaggttatcacttaccctggg
caacaagagaaatgctttgtgtgtggacaaactggtcactttgctgcagattgccctgga
aaatcaggtagcacaaatgcagcagctgatattccaatccacaagaaaaaatatcagttc
ctgaacatttgggtgttgcgagaatatttgcaatatgaattggccattccagatcctcct
tttatgatcaactttgagagaataatagacgactttgtattcctttgcttctttgttggc
aatgacttcctacctcatatgcctaccctggaaattcgagagggggctataaacttgctg
atgcatgtttacagaaaggagtttacagctatgggaggctatctaacagattctggtgag
gttctactagatagggtagagcatttcattcaagctgtcgctgtaaatgaagataaaata
tttcagaaaagaacgcggataaaacagtcaatggataacaatgaagaaatgaaacaaaga
tcaagaagagacccatctgaggtaccacctgaaccgatagacgataagattaaattagga
gaaccaggctacaaagagaggtattatgctgagaaatttaatacgaccaatccagaagaa
actgagcaaatcaaacaagacatggtactaaaatatgttgaaggtttgtgctgggtttgc
cggtactactaccaaggtgtatgctcttggcaatggttttacccataccattatgctcca
tttgcttcagatcttaagaatctacctgatttggaaatcacattttttattggagagccc
tttaaacctttagaccagttaatgggaaccctgccggctgcaagctcaaatgctctgcct
ggagaataccggaagttaatgactgatccctcatccccgatcctgaaattttaccctgct
gattttgatattgacatgaatggaaagcgcttcgcctggcagggtattgcaaaacttcct
ttcattgaggagaaactattgttagctgctacaaggaagcttgaagaaacgctaacggtg
gaagaacggcaacgcaacagtgtgatgcttgatttgttatacgtacaccccgctcatcct
ctgggccagcggatcctgcagtactaccatatctaccagcacttgccaccacatgaatgt
cttccatggatgattgacccgaattctagccaaggaatgaacggttttctttggtttagt
gaaaggaatgggttccaaactagagtggattcccctgttaatggtttgccatgcattgag
cagaaccgagccttaaatgttacatacctgtgtcctgccaaacactctcatatctcagaa
ccaccaagaggagcgatcattccggacaagatcttgacgtcagcagatataaaaccattt
cctcttttatggcatgaagacaatagcaaccgacgccgacaagcccgagataggccacaa
gtagctggagctatagctgggccttcgctgggagaagcagctcatcgtctgatcaaaaac
acccttaacatgaaatcctctactggtgcggcttcaggattaattgacccaaacggatac
taccgaaatgtaccgggtaatcattattatggtggagtcaatagaccaagagcaccgggt
ccctctccatacaggaaagcttatgatgatgactcgagctattactactatggaaagtat
aacaatagctcacagggaacgtttagcaacggtccaaggtatcctggtccatcaaatgga
tcacaagactataaccggaactacaactccaagatagtagcagaacagcagaaccgtggt
ggacttagagctggaatatctggtttatcgatagaagataacggcagaagcaaacaattg
tattcaagttatacagaagctgctaatgcaaatttgaaccggttgccttcaccgcccacc
caatggatcggtacacagccaggtggtaattttgtcggtggatactatagggaaggagtt
gggtatggcgaaacaaatggaaaaccggtaaagaaagtaatttatcaggccaagacacaa
caaagtcatcgaggcacaaacgaatga
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