Arabidopsis lyrata (lyrate rockcress): 9306772
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Entry
9306772 CDS
T01578
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9306772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9306772
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
9306772
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_1st
Ig_NUP210_7th
Big_2
Ig_NUP210_5th
Ig_NUP210_2nd
Ig_NUP210_3rd
Ig_NUP210_16th
Ig_NUP210_15th
Ig_NUP210_9th
Motif
Other DBs
NCBI-GeneID:
9306772
NCBI-ProteinID:
XP_020874699
LinkDB
All DBs
Position
Unknown
AA seq
1922 aa
AA seq
DB search
MVRVSFCFFFLLLLLSAGEISSQLGSGPHITDVNILLPPKMKNPVEYRLQGSDGCFKWSW
DHHDILSVTPEFNSSSHCSTSARLRSISPYSGRKETAVYATDIQTGMVIRCKVFIDNFSR
IQIFHNSIKLDLDGLSMLRVRAFDNEENEFSSLVGLQFMWKLMPESGGSTHHLAHVPLKE
SPLTDCGGLCGYLDIQKKLEDSGVFADLFVVKGTKIGHEKVSVHLLEAPLTHIADDIVLT
VAEAMSLEPRSPVYVLMGASFGYTLKVMRGNVPQAVHLPSPHHRWSVLNTSVAQVDSLIG
LTKALSLGVTTVVVEDTRVAGHIQGSSINVVTPDTIILYISPWSMSGDLITESKPFPSSM
HWYVVSGRQYLIQMKIFSGRPDAHEIYITETDDIKLYGKDSEYWKIFSLPDELSSEYGQQ
NSRILNAMSPGLGELMATLTYFSGHQESKEVLKVVQEIMVCEKVQFTLNSKDDTPKILLP
WTPAVYQEMELIVTGGCAKASSDYKWFTSDMSILSVSAYGIIQAKRPGIATVKVVSTFDS
QNFDEVIVEVSIPSSMVMLQNFPVETVVGSHLKAAVTMKALNGALFSRCDAFNSLIKWKT
GSDSFVIVNATSEIMMLDELRTMDSSPPCSRASILTSSPGRTVLQATLAKEFHYFDKSLS
ESIDLKATLSIGAYLPLSVRQDSDGNHHGGYWFDKAQEETDFGVSKLYLVPGTYVDVMLL
GGPERWDDNVEFTETVKTLNEDEEDLTSRVNVHHEFDRHANMYRISCQKLGSYKLVFLRG
NLVGMDHPVPAVAEALLSVHCSFPSSVVLIVDEPVNKLDVIRAASQADRAPGRLRVTPVT
VANGQIIRVAAVGISEFGEAFSNSSTLSLRWELTSCNNLAYWDDNYNSKMTKSSWERFLA
LRNESGLCTVRATVSGIDYSYSTPLPQGSQSTLTDAVRLQLVSTLRVTPEFNLVFFNPNA
KVNLSMTGGSCLWEAVVNNSRVAEVIRPPSGLQCSQMMLSPKGLGTTLVTVYDIGVSPPL
SALALIKVADVDWIKIASGDEISIMEGSTHSIDLLTGIDDGMTFDSSQYPLMDIMVHIED
DLVEHVTVDDNSLSVGEHVGTSSFKIAARRLGITTLYVSARQQSGDKILSQTIKVEVYSP
PRLHPQGIFLVPGASYVLTIEGGPTMNVSVDYTTVDNEVAKIEKSGRLYATSPGNTTIYA
TIYGSEGTVVCQAIGNAEVGLPAAAMLVAQSDTMAVGHEMPMSPSFPEGDLLSFYELCSA
YKWTIEDEKVLIFIASSINVEENAGFVNVVQGRSAGKTRVTIAFSCDFVSPGLYSESRTY
EASMILSVVPDLPLSLGAPMTWVLPPFYTSSGLLPSSLEPQKHRDGQSHKGNIVYSILKD
CSSRADFERDTISINGGSVKTTDSNNVACIQAKDRTSGRIEIAACVRVAEVAQIRMKSEG
IPFHVIDLAVGGELELPINYYDTLGIPFLEAHGVITYNVETNHRDVVSIKTVNDQPSAYI
KGIKHGKALIRVSIGGNLRKSDYVLVSVGAHIFPQNPVIHTGNVLNFSIAGSDHEVSGQW
VTSNRSVLSVNVASGQAKAISQGSTHITFEGHGLKLQTKVTVLFGNTIYVDSPSETLANI
HVPAEGYKFPVKFRENKFAVSENGNKATFNCQVDPPFIGYAKPWMDLVTGNTYCLFFPYS
PEHLVRSMSITKDMKPHVSFSVNASLKEARHVSGSASALLIGGFSVTGPNKLNINPDSNT
TSISIVGNTDVQIHCRNKGRLSINLIKREDFGIAGLALYKVNVLRSEQFTDIIRITLPAT
GQSVEIDVSYDTGESLVASSKDGYSVLFKILWCVLVLAISVIILMKVIDRQGPIGPTGAT
RTATNSGTAAPGTPERRSGAVIYHEESPRTPSPFMEYVKRTVDETPYYRREGRRRFNPQN
TM
NT seq
5769 nt
NT seq
+upstream
nt +downstream
nt
atggtccgtgtctcgttctgcttcttctttctccttctcctgctatcggctggagaaatt
tcatcgcaattaggttctggtccacacattaccgatgttaacatactcttacctccgaag
atgaagaacccagttgagtatcgccttcaaggaagtgatggctgcttcaaatggtcgtgg
gatcatcatgacattctctcagttacacctgagtttaattcgagcagtcattgctcgacc
agcgcgcgtctcagatcgatttctccgtatagtggtagaaaggagactgcagtttatgcc
actgatatacagaccgggatggtgattcgctgcaaggtgtttattgacaacttctcacgg
attcagatttttcataattctatcaagcttgatcttgatggactttcaatgcttagagtc
cgcgcttttgataatgaagagaacgagttctcctcactggtgggtctacaattcatgtgg
aagctgatgcctgaaagtggtggatcaacgcatcaccttgctcatgtgcctttgaaggaa
tctccgttgactgactgtggaggactgtgtggctacttggatatccagaaaaagcttgaa
gatagtggtgtatttgcagatttgtttgtcgtgaagggaaccaaaattggacatgagaag
gtttcagttcatctgcttgaggctcctctgacccatatagccgatgatatagtactaacg
gtggcagaggccatgtctcttgaacctcgttcaccagtctatgtcctgatgggagcttct
tttggttacacgttaaaggtcatgcgtggaaatgttcctcaagccgtgcatctaccatca
ccacatcatagatggtctgtgttgaacacttctgttgctcaagtggattctttgataggt
ctgactaaagcgttaagcttgggggtaacaacagttgttgttgaggatacccgggtcgct
ggccacattcaaggatcatctattaatgttgtcactccagatactattatcttgtacata
tcaccttggtcaatgtcaggggatcttattacagaatcgaaaccttttccatcatcgatg
cattggtatgtggtgtctggtcgtcaatatctaattcaaatgaagattttctctggaaga
cctgatgcacatgaaatctatataactgagacggatgacataaaactgtatggaaaagat
tcagagtattggaaaatcttctcactgccagatgaactttcctctgaatatggtcagcaa
aattctagaattttgaacgcaatgtcaccaggattaggagagctaatggctacattgact
tacttcagtgggcatcaggaatcaaaagaggttctcaaagttgtccaagaaattatggtt
tgtgagaaagtgcagttcacattgaacagtaaagatgacacacctaagattctactccct
tggacccctgctgtttatcaggagatggagctaattgtgacaggaggttgtgcaaaagca
tcgagtgactacaagtggtttacttcagatatgagcattttgtcggtgtcagcttatgga
attatccaggcaaagaggcctggaatagccactgtgaaggtggtgtctactttcgattca
caaaattttgatgaggttatcgttgaagtttccattccatcctctatggttatgttgcaa
aacttcccagtagagacagttgttggatcacacctgaaagctgctgtcacaatgaaggct
ttaaatggtgccttgttctctagatgtgatgcatttaattcattgataaagtggaagaca
gggagtgactcttttgttattgttaatgcaacatctgagataatgatgttggacgaacta
agaaccatggactccagccctccttgttcacgggcttctatattgacttcatctcctggc
cgaacagtactacaagcaactctggcaaaagagttccattattttgataagtctttgagt
gaatcaattgatttgaaagcaactttaagtatcggggcctatctgccactttctgtcaga
caagatagtgacgggaatcatcatggtggatattggtttgataaggcacaagaagaaact
gattttggtgttagtaagctatatcttgtacctgggacatatgttgacgttatgcttctg
gggggacctgaaaggtgggatgacaatgttgagttcaccgagactgtgaagacattgaat
gaagatgaggaggatcttacaagcagagttaacgtccatcatgagtttgaccgccatgct
aacatgtatagaatttcgtgccagaagcttggctcctataaactggtcttcttgcgtggg
aatctggtgggtatggaccatcctgtacctgcagttgcagaagctttattgtctgttcat
tgcagcttcccatcctctgttgtgctcattgttgatgaacctgttaacaagcttgatgtg
attagagctgctagtcaagctgacagggcaccaggacgacttcgtgtaactcctgtgact
gtggcaaatgggcagataattcgtgtggctgctgttggtattagcgagtttggagaagct
ttttcaaactcctcaactctttctctcaggtgggaactgaccagttgcaacaatttggca
tactgggacgataattataactcaaaaatgacaaagtctagctgggagagatttctggct
cttcgcaacgaatcaggattgtgcactgtccgagctaccgtttctggtattgattattca
tactcaactccgcttccacaaggttctcaaagtactctcactgatgctgtacgcttacag
ttggtttccacactaagagtcacaccagagttcaacctggtcttttttaatccgaatgcc
aaggtaaatttgtcaatgactggagggagctgtttgtgggaagcagttgtgaataattct
cgtgtagcagaagttattcgacccccatctggcctgcaatgctcgcaaatgatgctatct
ccaaaagggttggggactacactcgtgacagtatacgacattggggtttctcctccactt
tctgctcttgcattgattaaagttgcagatgtggactggataaagattgcatctggggat
gagataagtataatggaaggaagtacacactccattgatctcttgactggcattgacgat
gggatgacctttgattcttcccagtacccacttatggacattatggtgcatattgaggat
gatctcgtagagcatgtcactgttgatgataattcactttcggttggtgaacacgtggga
acttcctcttttaaaattgctgctagacgactgggaatcacaaccctatatgtcagcgca
agacaacaatcaggagataaaatacttagccaaactattaaagtcgaagtttattcccct
ccaagacttcacccacaaggaatatttcttgttcccggtgcttcttatgtgctcactatt
gaaggaggcccgaccatgaatgtttctgttgactacaccactgtggataacgaagttgca
aagattgaaaaatcaggacgcctatacgcaacatcacccggcaacacgacaatctatgca
acgatttacgggagtgaaggtactgtagtttgtcaggcaattggcaatgccgaagtagga
cttcctgctgctgcgatgctggtagctcaaagtgacactatggccgttggtcatgaaatg
cctatgtccccatcatttcctgagggagatcttttgtcattttatgagctctgcagcgca
tacaagtggactattgaagatgagaaggtgttaattttcattgcatcatccattaatgtg
gaagagaatgctggctttgtcaatgtcgtccaaggaagatcagctggcaaaaccagagtc
acaattgccttctcatgtgatttcgtgtctcctggcttgtactctgaatctagaacatat
gaagcgtcaatgattttatctgttgtgcctgatctccctctttcgcttggcgctcctatg
acttgggttcttccgcctttttatacatcatctggtctattaccttcatctctagagcca
cagaagcatagggatggccaaagtcacaaaggcaatatagtctattccatattgaaagac
tgtagctctcgggctgattttgaacgagataccatatcaataaatggcggaagtgtcaaa
acaacagatagcaacaatgttgcatgtattcaagccaaagaccgcacaagtggaaggatt
gagattgctgcttgtgtgagggttgcagaggttgctcaaataagaatgaagagtgagggg
atccctttccacgtgatagatcttgctgttggcggtgaacttgaacttccaatcaattac
tatgacactttaggaatcccttttctcgaagcacatggtgttattacatataatgtcgaa
accaatcatcgtgatgttgtatctattaagactgtcaatgaccaaccaagtgcctacatt
aagggaataaaacatggcaaagctctcattcgggtttccattggcggtaatctcaggaaa
tcagactatgttctggtttcagttggggcgcatatctttcctcaaaacccggtcattcac
actggaaatgtgttaaatttcagcatagcagggtctgatcatgaagtctctggtcaatgg
gttacatcaaacagaagtgtcctatccgtaaatgtggcatctggccaagctaaagcgatc
agccaaggctcaactcacattacatttgaaggtcatggtttgaaactgcaaacaaaagtc
acagtgctatttggaaacaccatatacgtcgactctccaagtgaaacactggcaaatatc
cacgtccctgcagaaggatataaatttccagtgaaattcagggagaacaagtttgcagtc
tctgaaaatggaaacaaggccacgtttaactgccaagtagaccctccgtttataggatac
gcaaagccatggatggatctcgttacgggcaacacttattgtcttttcttcccatactca
ccagagcatctggttcgctccatgtctataacaaaagacatgaaacctcatgtgtccttc
tctgttaatgcttcacttaaagaagctcgtcatgtttcgggatctgcatctgcacttctt
attggagggttttctgtaacagggccaaataagttgaatataaacccagattcaaacacg
acaagtatttcaatagtggggaacactgatgttcaaattcactgccgcaacaaaggtagg
ttatcgatcaacttgatcaaaagggaagattttggtatcgcagggcttgcactatacaag
gtgaatgtgttaagatcagagcaattcacagatataatccgcatcactctccccgctact
ggccaaagtgtagaaattgatgtctcctatgacacgggcgagtccctagtagcttcgtct
aaagatggatactctgttttgttcaagatactatggtgcgttttggtgttggcaatatca
gtgatcatcttgatgaaagtgatagatagacaagggccaattggtccaacaggagctact
agaactgcaacaaacagtggaactgcagcaccgggaacaccagaaagaagaagcggtgca
gttatataccatgaggaatctccaagaacaccatcaccgtttatggagtatgtgaagaga
acagtggatgaaactccctattacagaagagaaggaagaagaaggtttaatcctcaaaac
acaatgtag
DBGET
integrated database retrieval system
